BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2974.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312306|ref|YP_003776398.1| hypothetical protein Hsero_3002...   407   e-115

>gi|300312306|ref|YP_003776398.1| hypothetical protein Hsero_3002
           [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/248 (86%), Positives = 226/248 (91%)

Query: 1   MELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLR 60
           MELL+PDW APANIGALTTLRAGG+SPAPYDDGQGG GLNLG HVEDD ALVARNRALL 
Sbjct: 1   MELLLPDWTAPANIGALTTLRAGGFSPAPYDDGQGGPGLNLGLHVEDDAALVARNRALLG 60

Query: 61  RLLPAEPAWLTQVHGVNVLDAAALPDDACADACISSTPGAVCVMMTADCLPVLFCDHAGT 120
           RLLP+EPAWLTQVHGV VLDAAALPD   ADACISSTPGAVCVMMTADCLPVLFCD AG+
Sbjct: 61  RLLPSEPAWLTQVHGVTVLDAAALPDQPTADACISSTPGAVCVMMTADCLPVLFCDRAGS 120

Query: 121 VVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQQA 180
           VVGAAHAGWRGLAAGVLEQTVAAMRARGA +IMAWLGPAIG  +FEVG EVR+ F+AQQA
Sbjct: 121 VVGAAHAGWRGLAAGVLEQTVAAMRARGAQEIMAWLGPAIGPGHFEVGGEVRQAFVAQQA 180

Query: 181 QADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADTRFYSYRRDRTTGR 240
            A AAFR YPGRPGKYLADIY+LARQRLA V V +VSGGGLCTVADTRFYSYRRD+TTGR
Sbjct: 181 AAAAAFRDYPGRPGKYLADIYQLARQRLAAVGVTEVSGGGLCTVADTRFYSYRRDKTTGR 240

Query: 241 MGSLIWLK 248
           M SL+WLK
Sbjct: 241 MASLVWLK 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,972
Number of extensions: 19260
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)