BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2955.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980...   806   0.0  

>gi|300312284|ref|YP_003776376.1| hypothetical protein Hsero_2980
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/415 (94%), Positives = 406/415 (97%)

Query: 1   MRRPAKRSSSKLSADSQHLVTFAQAIAQASSRLEERAWLKPLDALLNKLLRTGHQGLLDA 60
           MRRPAKRSSSKLSADSQHLVTFAQAIAQASSRLEERAWL+PLDALLNKLLRTGHQGL+DA
Sbjct: 1   MRRPAKRSSSKLSADSQHLVTFAQAIAQASSRLEERAWLQPLDALLNKLLRTGHQGLIDA 60

Query: 61  ALDHLFKADLDAYDVLIEAVEAGSESTTLEHDGQDYDVQLLVLPVLAWTRFAIASGPIAG 120
           ALDHLFKADLDAYDVLIEAVEAGSE+T+LEH+GQDYDVQLLVLPVLAWTRFAIASGPIA 
Sbjct: 61  ALDHLFKADLDAYDVLIEAVEAGSEATSLEHEGQDYDVQLLVLPVLAWTRFAIASGPIAS 120

Query: 121 DLLSAIGAHLHAHVLATDARLALAPALFSIEQLPRVHADVFALTRQMGQSALKNAPVQMR 180
           ++LSAIGAHLHAHVLA DARLALAPALFSIEQLPR+HADVFALTRQMGQ+ALK  PVQ+R
Sbjct: 121 EMLSAIGAHLHAHVLAKDARLALAPALFSIEQLPRMHADVFALTRQMGQTALKTGPVQLR 180

Query: 181 GEQPPTAAFLADTRYVIAAVAVPAGGALFHWQDSEQQSHFSANKAAAFEAWKQQATPLFT 240
           GEQPPTAAFLADTRYVIAAV VPAGGALFHWQ+SEQQSHFSANKAAAFEAWKQQATPLFT
Sbjct: 181 GEQPPTAAFLADTRYVIAAVVVPAGGALFHWQESEQQSHFSANKAAAFEAWKQQATPLFT 240

Query: 241 RLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDIASSELHASIGGFSED 300
           RLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDI+S++LHASIGGFSED
Sbjct: 241 RLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDISSADLHASIGGFSED 300

Query: 301 INGQIDEYRIGFSIGDDPTVVYGTVWPLYEQESGEELPMMIPAGAGLLEGLPPSPLQQIL 360
           INGQIDEYRIGFSIG DPTVVYGTVWPLYEQESGE+LPMMIP GAGLLEGLP SPLQQIL
Sbjct: 301 INGQIDEYRIGFSIGGDPTVVYGTVWPLYEQESGEDLPMMIPGGAGLLEGLPASPLQQIL 360

Query: 361 MVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH 415
            VLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH
Sbjct: 361 TVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVEHFH 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,297,078
Number of extensions: 54649
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)