BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2953.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978...   249   9e-68
gi|300312418|ref|YP_003776510.1| signal peptide protein [Herbasp...    78   5e-16

>gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score =  249 bits (636), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 155/182 (85%), Positives = 164/182 (90%), Gaps = 1/182 (0%)

Query: 1   MKKHLSLLALLGALFAVAGIAPAHADTDSTHTTKKKVVKKAHTKKAAAAAAAPAAK-MPF 59
           MKKHL+L+ALLGALFA AGI  AHA+TD+    KKKVVKKA  KKAAAAAAA  A  MPF
Sbjct: 1   MKKHLTLIALLGALFATAGITAAHAETDTKPAAKKKVVKKAPAKKAAAAAAAAPAAKMPF 60

Query: 60  SSDAEDDDSEPELSGTQSADFQCEMGNKLTIWKNDADDKHIAIRWNKRIHRLTRVATTTG 119
           SSDAEDDDSEPEL GT SADFQCEMG+KLTIWKN+ DDKHIAIRW+KRIHRLTRV TTTG
Sbjct: 61  SSDAEDDDSEPELGGTLSADFQCEMGHKLTIWKNETDDKHIAIRWDKRIHRLTRVETTTG 120

Query: 120 ANRFENHKMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIKAAAAASAAPASTLAAAPH 179
           ANRFEN KMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIKAAAAASAAPA+T+AAAPH
Sbjct: 121 ANRFENRKMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIKAAAAASAAPAATVAAAPH 180

Query: 180 QN 181
           QN
Sbjct: 181 QN 182


>gi|300312418|ref|YP_003776510.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score = 77.8 bits (190), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 50/76 (65%)

Query: 80  FQCEMGNKLTIWKNDADDKHIAIRWNKRIHRLTRVATTTGANRFENHKMGLVWIGIPAKG 139
           F CEMGNK+ +  +      + + W  + + +  V+T+TGA R EN   GLVWI IP+K 
Sbjct: 66  FSCEMGNKVELRMDGRVTDGVTLVWKGKNYMMNPVSTSTGAVRLENKGEGLVWIQIPSKS 125

Query: 140 LLLDSKKGQQLANECK 155
           +LL++K GQQLAN+C+
Sbjct: 126 MLLNAKIGQQLANDCR 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.124    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 280,196
Number of extensions: 9093
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)