BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2950.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312279|ref|YP_003776371.1| GntR family transcription regul...   534   e-153
gi|300313880|ref|YP_003777972.1| transcription regulator protein...   141   6e-35
gi|300312368|ref|YP_003776460.1| GntR family transcription regul...    55   8e-09

>gi|300312279|ref|YP_003776371.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  534 bits (1375), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/267 (97%), Positives = 262/267 (98%)

Query: 1   VVKFEVMSSILPNSNNADAQAAGAGAASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP 60
           VVKFEVMSSILPNSNNADA AAGAG ASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP
Sbjct: 68  VVKFEVMSSILPNSNNADAHAAGAGVASPAPTFSPLYQQIKALIMQRLEAGEWKPGELIP 127

Query: 61  SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSEE 120
           SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADS+E
Sbjct: 128 SEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSDE 187

Query: 121 PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGAPIILEDIWLPGAIFKG 180
           PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNG PIILEDIWLPGAIFKG
Sbjct: 188 PQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGVPIILEDIWLPGAIFKG 247

Query: 181 LTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADQDAAEFLGVAPQTPLLSVERAS 240
           LTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGAD DAAEFLGV PQTPLLSVERAS
Sbjct: 248 LTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADPDAAEFLGVTPQTPLLSVERAS 307

Query: 241 FTYGDKPVEMRRGLYLTTNHHYQSELS 267
           FTYGDKPVEMRRGLYLTTNHHYQSELS
Sbjct: 308 FTYGDKPVEMRRGLYLTTNHHYQSELS 334


>gi|300313880|ref|YP_003777972.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  141 bits (355), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 127/232 (54%)

Query: 35  PLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQG 94
           PLY Q++ L+  ++ A +W+PG+ IPSE EL   ++V+ GTVR+AI+ L AE LV R  G
Sbjct: 12  PLYLQLRDLLATQIRAQKWQPGQPIPSEAELSQTYQVAVGTVRRAIETLMAEGLVERTHG 71

Query: 95  KGTFVATHHETQAQFRFLRLMADSEEPQRPENKIIEVKRVRASAEVARQLDMKSGDSVIF 154
           +GTFV       + FRF R  +    P  P++ I+  K V A A+ A  L +K    VI 
Sbjct: 72  RGTFVRKARFDNSLFRFFRFESADGRPLAPKSVIVSRKLVEAPAQAAEALQLKPHAKVIE 131

Query: 155 IRRVKSFNGAPIILEDIWLPGAIFKGLTAERLVEYRGPLYGLFESEFGTRMIRAEERIRA 214
           + R++  +G P++ E+I+L    FK L  +   E+   LY L+E E G  +  A E +  
Sbjct: 132 LHRLRMVDGQPVLAENIYLCAQRFKALADKAPEEFGDLLYPLYERECGLIVASARETLTV 191

Query: 215 VGADQDAAEFLGVAPQTPLLSVERASFTYGDKPVEMRRGLYLTTNHHYQSEL 266
                  A+ LG+  +TP++ +ER +F    +P+E R+     +   Y +E+
Sbjct: 192 ETVTAAQAKLLGLTEKTPVVMIERIAFGSDGQPLEWRQSRGAASKFRYSAEI 243


>gi|300312368|ref|YP_003776460.1| GntR family transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 36 LYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGK 95
          L   + +++ +++ AGE+ P   +PSE+EL  RF VS+  +R+AI  L +E LV  R+G 
Sbjct: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89

Query: 96 GTFV 99
          GT V
Sbjct: 90 GTVV 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 718,899
Number of extensions: 27723
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)