BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2943.p
         (954 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...  1980   0.0  

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score = 1980 bits (5129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 950/954 (99%), Positives = 953/954 (99%)

Query: 1   MTKLYEQYNINSYLFGGNAPYIEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPD 60
           MTKLYEQYNINSYLFGGNAPYIEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPD
Sbjct: 1   MTKLYEQYNINSYLFGGNAPYIEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPD 60

Query: 61  VAHAPVIASFAERAKQGPIRTVIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQ 120
           VAHAPVIASFAERAKQGPIRTVIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQ
Sbjct: 61  VAHAPVIASFAERAKQGPIRTVIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQ 120

Query: 121 ERPNIPELDPSFYGFTDADMDIVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYI 180
           ERPNIPELDPSFYGFTDADMDIVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYI
Sbjct: 121 ERPNIPELDPSFYGFTDADMDIVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYI 180

Query: 181 SDMSEVRWLEERLEPTRAVPSFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGE 240
           SDM+EVRWLEERLEPTRAVPSFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGE
Sbjct: 181 SDMAEVRWLEERLEPTRAVPSFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGE 240

Query: 241 SFIASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAG 300
           SFIASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAG
Sbjct: 241 SFIASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAG 300

Query: 301 DVKYHQGFSSDVSTPGGPVHLSLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPIL 360
           DVKYHQGFSSDVSTPGGPVHLSLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPIL
Sbjct: 301 DVKYHQGFSSDVSTPGGPVHLSLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQVLPIL 360

Query: 361 VHGDAAFAGQGVVMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVK 420
           VHGDAAFAGQGVVMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVK
Sbjct: 361 VHGDAAFAGQGVVMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVK 420

Query: 421 MIEAPVLHVNGDDPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLM 480
           MIEAPVLHVNGDDPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLM
Sbjct: 421 MIEAPVLHVNGDDPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLM 480

Query: 481 YKKIAQHPGTRKLYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAV 540
           YKKIAQHPGTRKLYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAV
Sbjct: 481 YKKIAQHPGTRKLYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAV 540

Query: 541 DWLPFLNRKWTDAAETAVPLAELKRLATKITSVPEGFKVHSLVEKVLNDRAAMGRGEMNL 600
           DWLPFLNRKWTDAAETAVP+AELKRLA KIT+VPEGFKVHSLVEKVLNDRAAMGRGEMNL
Sbjct: 541 DWLPFLNRKWTDAAETAVPMAELKRLAAKITTVPEGFKVHSLVEKVLNDRAAMGRGEMNL 600

Query: 601 DWGMGEHLAYASLVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAE 660
           DWGMGEHLAYASLVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAE
Sbjct: 601 DWGMGEHLAYASLVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAE 660

Query: 661 NQSTFTVIDSVLSEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVK 720
           NQSTFTVIDSVLSEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVK
Sbjct: 661 NQSTFTVIDSVLSEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVK 720

Query: 721 WGRASGLVQMLPHGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIR 780
           WGRASGLVQMLPHGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIR
Sbjct: 721 WGRASGLVQMLPHGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIR 780

Query: 781 LFRKPLIIMTPKSLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYY 840
           LFRKPLIIMTPKSLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYY
Sbjct: 781 LFRKPLIIMTPKSLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYY 840

Query: 841 DLVNARKERGQTDTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQ 900
           DLVNARKERGQTDTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQ
Sbjct: 841 DLVNARKERGQTDTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQ 900

Query: 901 HNIFENLSEGQKLAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK 954
           HNIFENLSEGQKLAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK
Sbjct: 901 HNIFENLSEGQKLAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK 954


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,148,043
Number of extensions: 140582
Number of successful extensions: 385
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 1
Length of query: 954
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 860
Effective length of database: 1,174,780
Effective search space: 1010310800
Effective search space used: 1010310800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)