BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2937.p
         (743 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase [Her...  1337   0.0  

>gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 747

 Score = 1337 bits (3459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/719 (92%), Positives = 676/719 (94%), Gaps = 11/719 (1%)

Query: 18  YRFAAVTAPEAPADIVDSSASTL----PADAQEVTADSPGVHDAEIDRLFGAGGPLGGAV 73
           YRFAAVTAPEAPA+I D SAS L    P DA  V A  PGVHDAEIDRLFGAGGPLGGAV
Sbjct: 15  YRFAAVTAPEAPAEIPDRSASDLTPATPEDAAAVAA--PGVHDAEIDRLFGAGGPLGGAV 72

Query: 74  GSYRPRHAQTEMAKAIATAIANQGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTL 133
           GSYRPRHAQTEMAKAIATAIA QGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTL
Sbjct: 73  GSYRPRHAQTEMAKAIATAIAGQGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTL 132

Query: 134 QDQLYNRDIPTVRNALHAPVSVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISR 193
           QDQL+NRDIPTVR ALHAPVSVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISR
Sbjct: 133 QDQLFNRDIPTVRKALHAPVSVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISR 192

Query: 194 FVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGSECQYYQDCFVMKARKEAQQADVVV 253
           FVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFG+ECQYYQDCFVMKARKEAQQADVVV
Sbjct: 193 FVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVV 252

Query: 254 VNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVL 313
           VNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVL
Sbjct: 253 VNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVL 312

Query: 314 AEGLSHARDGADWARLVAPVERAARDLRLAFPEESIRLALNQIAPSAAFFPALDTLKDSM 373
           AEGLSHARDGADWARLVAPVERAARDLRLAF E+S+RLALNQIAPS+ FFPALDTLKD M
Sbjct: 313 AEGLSHARDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCM 372

Query: 374 DDMIAVLEKQAERAETIEQCRDRANELLRQLENWGTPEELAKAQPEAASKPTATVGEPSE 433
           DDMI VLEKQAERAETIEQCRDRANELLRQLENWGTPEEL K Q EAA+K  A   E   
Sbjct: 373 DDMITVLEKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKR 432

Query: 434 GE-GDE----SPQKPFYVPWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLA 488
            E GDE    S QKPFYV WVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLA
Sbjct: 433 AESGDEQQEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLA 492

Query: 489 VKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQHLPQPNSFEYTDAVIDAALPTI 548
           VKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQ+LPQPNSFEYTDAVIDAALP I
Sbjct: 493 VKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPII 552

Query: 549 EAAGGRCFFLCTTLRAVNRAAERLRTEFAARGHDFPLFVQGEAGRTELLDRFRAAGNGVL 608
           EAAGGRCFFLCTTLRAVNRAAERLR EF ARGH FPLFVQGEAGRTELLDRFRAAGNGVL
Sbjct: 553 EAAGGRCFFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVL 612

Query: 609 IGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAII 668
           IGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAII
Sbjct: 613 IGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAII 672

Query: 669 NLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTRELEVVQAFFREQD 727
           NLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTRE EVVQAFFREQD
Sbjct: 673 NLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFFREQD 731


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,245,744
Number of extensions: 94993
Number of successful extensions: 334
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 651
Effective length of database: 1,184,250
Effective search space: 770946750
Effective search space used: 770946750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)