BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2936.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312267|ref|YP_003776359.1| hypothetical protein Hsero_2963...   538   e-154

>gi|300312267|ref|YP_003776359.1| hypothetical protein Hsero_2963
           [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/315 (83%), Positives = 290/315 (92%)

Query: 1   MADHTSLVPVRSSELNLGKPAPWHIYNEAGKLLLARGTMIDTPDQLAGLIENGLYRNARW 60
           MADHTSLVPVR++EL LGKPAPW IYNE GKLLLARGTMIDTPDQLAGLIENGLYRNARW
Sbjct: 1   MADHTSLVPVRATELVLGKPAPWPIYNEVGKLLLARGTMIDTPDQLAGLIENGLYRNARW 60

Query: 61  IAEPDTESVPLPQARDVLRKKHGGKKPHKPKPALRGQASVIPLDDVRWQIGDTVWLQLAD 120
           +AEPDTESVPLPQARDVLRKK GGK+P KP  A RGQ +VI +++VRWQIGDT+WLQLA+
Sbjct: 61  VAEPDTESVPLPQARDVLRKKVGGKRPVKPAAAARGQQTVITMEEVRWQIGDTLWLQLAE 120

Query: 121 DAAQRHAVTLVGCLSNRSILVSAPQKEGKQIFLREGQAFVVRALTGRRAYAFASQLLKYQ 180
           DAAQR+AV LVGCL  RSILV+APQK+GKQ+F+R+GQAFVVRALTGRRAYAF+SQLLKYQ
Sbjct: 121 DAAQRYAVNLVGCLPGRSILVTAPQKDGKQLFMRDGQAFVVRALTGRRAYAFSSQLLKYQ 180

Query: 181 HTPFVYLHLSAPREVRSTVIRQATRVPVGAEGYLEVDGSTPLPASVIDLSLAGASLVATS 240
            TPFVYLHL+ PREVRSTVIRQATRVPVGAEGYLEVDG+TP+ ASVIDLSLAGASLVATS
Sbjct: 181 QTPFVYLHLAMPREVRSTVIRQATRVPVGAEGYLEVDGNTPVAASVIDLSLAGASLVATS 240

Query: 241 LKGRVEAKKGVSGTLRFIASVADQQLPLELPVVLRAVESLGEADFHQYGVEFAPLTVRDK 300
           L GRV A+KGV G LRF+ASVADQQL L+L VVLR VE+LGEADF+QYGVEF+ +TVRDK
Sbjct: 241 LSGRVAAQKGVVGRLRFVASVADQQLTLDLRVVLRTVEALGEADFYQYGVEFSNMTVRDK 300

Query: 301 LVLSAYVYQELTLQE 315
           LVLSAYVYQEL+ QE
Sbjct: 301 LVLSAYVYQELSAQE 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,641
Number of extensions: 37676
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)