BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2934.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate carboxyl...   575   e-165
gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyl...    81   1e-16

>gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate
           carboxylmethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 321

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 308/321 (95%), Positives = 312/321 (97%)

Query: 1   MSDKPSRFPLSLSSVVDKKKTANAGRDVPGRPQATTQTAAKNAAQSSQRAALKPVQQGLA 60
           MSDK SRFPLSLSSVVDKKK A  GRD  GRPQATTQTAAKNAAQSSQRAALKPVQQGLA
Sbjct: 1   MSDKTSRFPLSLSSVVDKKKAAGVGRDAAGRPQATTQTAAKNAAQSSQRAALKPVQQGLA 60

Query: 61  QALRPPPAPPRAPLAPAQPLLSAAPVPRTAVKNVMTVTQTNASHHASPLASEAVRKAMVA 120
           QALRPPPAPPRAP+ PAQPLLSAAPVPRTAV NVMTVTQTNASHHASPLASEAVRKAMVA
Sbjct: 61  QALRPPPAPPRAPVPPAQPLLSAAPVPRTAVSNVMTVTQTNASHHASPLASEAVRKAMVA 120

Query: 121 RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELM 180
           RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIE+M
Sbjct: 121 RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIEIM 180

Query: 181 RQNRHGGRLERVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL 240
           RQNRHGGRL+RVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL
Sbjct: 181 RQNRHGGRLDRVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL 240

Query: 241 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQVLELIERVGQ 300
           HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLA+GGRLVAPVGERQQVLELIERVG 
Sbjct: 241 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAVGGRLVAPVGERQQVLELIERVGP 300

Query: 301 RDWRRTTLEQCHFVPLRPGTV 321
           RDWRRTTLEQCHFVPLRPGTV
Sbjct: 301 RDWRRTTLEQCHFVPLRPGTV 321


>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate
           O-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 9/192 (4%)

Query: 131 KVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELMRQNRHGGRLE 190
            VL  L  V R  FV     S A+ D  +P+   + +  P I AR+++     +H    E
Sbjct: 24  DVLDLLMVVKREEFVPAAHRSLAFFDTEIPLPGGENMLAPKIEARILQEANVKKH----E 79

Query: 191 RVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGMLGL- 249
            VLEIG G GY AA+L+  A  V ++E    L  LA+ NL    VAN+ +  G+G  G  
Sbjct: 80  YVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAERNLSDYGVANVDVQLGNGAQGWV 139

Query: 250 ---PQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQV-LELIERVGQRDWRR 305
               + A +D I+++ +   +P+A  +QL IGGRL+A VG    + L+LI R  +  +  
Sbjct: 140 GADGKAAEYDVIVISGSLPVLPEAFGKQLKIGGRLLAIVGSLPVMELQLITRTSEHAFET 199

Query: 306 TTLEQCHFVPLR 317
             + +    PL 
Sbjct: 200 VNVVETLAKPLH 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 854,899
Number of extensions: 33812
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)