BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2924.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herba...   893   0.0  
gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase r...    74   2e-14

>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/441 (97%), Positives = 438/441 (99%)

Query: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60
           MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG
Sbjct: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60

Query: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120
           LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH
Sbjct: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120

Query: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180
           ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN
Sbjct: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180

Query: 181 KHRADLIAYFEQHKELLDTDAQRRLHANPLRILDTKNPSMQEMVNAAPKLLDYLGEESRA 240
           KHRADLIAYFEQHK+LLDTDAQRRLHANPLRILDTKNP+MQEMVNAAPKLLDYLGEESRA
Sbjct: 181 KHRADLIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRA 240

Query: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300
           HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF
Sbjct: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300

Query: 301 GGKPTPACGFAMGVERLLELMKANGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360
           GGKPTPACGFAMGVERLLELMKA+GEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360

Query: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKAATATVKHLREGNAEEGRANQ 420
           DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELK  TATVKH+REGNAEEGRANQ
Sbjct: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ 420

Query: 421 SNMAFDGVVDYIVEQIVGDHD 441
           +++ FDGVVDYIVEQIVGDHD
Sbjct: 421 NSLPFDGVVDYIVEQIVGDHD 441


>gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase
           regulatory subunit [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 151/377 (40%), Gaps = 61/377 (16%)

Query: 16  MNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMYSF 75
           + D+LP++A   E     +    + YG++ +  P++E       G G+ TD+     +  
Sbjct: 10  IADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTFKL 66

Query: 76  TDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRHERPQ-RGRYRQFHQV 134
            D ++G  L +R + T  V R    H L      RL Y G +  H RP      R+  Q+
Sbjct: 67  VDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPTGLHATREPIQI 124

Query: 135 GAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERNKHRADLIAYFEQHK 194
           GAE  G +G + DAE+  +        G+  IRL+L  +G           +IA      
Sbjct: 125 GAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRA-------IIA------ 171

Query: 195 ELLDTDAQRRLHANPLRILDTKN-PSMQEMVN-----------AAPKLLDYLGEESRAH- 241
              +  A +R  A    +L  K+ P +QE+             A P L   +   +RA  
Sbjct: 172 ---NDAAAKRDEAQLFALLQAKDVPGLQEITATYQEGTRAALLALPNLYGDISVIARARI 228

Query: 242 ----FEGVQKILR-----------HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGT 286
                 G+ + L            H     TI+   +RG  Y++  +F       G    
Sbjct: 229 TLPALPGIAQALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GLPNA 286

Query: 287 VCGGGRYDPLIEMFGGKPTPACGFAMGVERLLELMKANGEQYAPNQCDVYLVHQGEDAQL 346
           V  GGRYD + E F G+  PA GF++ +  L  LM     + A       L   G DA L
Sbjct: 287 VVRGGRYDHVGEAF-GRARPATGFSLDLRELARLMPGAERKRA------ILAPWGRDAGL 339

Query: 347 QSFVLAERLRTAGLDVV 363
           +  +   +LR AG  V+
Sbjct: 340 REKI--AQLRQAGEIVI 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,435,937
Number of extensions: 63217
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)