BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2922.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane prote...   683   0.0  

>gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/399 (85%), Positives = 375/399 (93%)

Query: 1   MRSVTATAAQATSFARSRRAGKLALNMAAIAAVVALSGCSLFSSKKDPNPPAPLVEFTQK 60
           MRSVTATAAQA+S ARSRRAGK+AL +AA+AAVVALSGCS FSSKK+PNPPAPLVEFTQK
Sbjct: 1   MRSVTATAAQASSIARSRRAGKMALKLAAVAAVVALSGCSWFSSKKNPNPPAPLVEFTQK 60

Query: 61  MRAQSAWTVSVGKAGSYQFSPAFASGSIFAAANDGTVVRINAQNGQTLWRSRAEGDLTAG 120
           +R Q+AW+VSVGKAG++QFSP +A+GSIFAA NDGTVVRINAQ GQTLWR+R +  LTAG
Sbjct: 61  LRVQTAWSVSVGKAGNFQFSPVYAAGSIFAAGNDGTVVRINAQTGQTLWRARTDMSLTAG 120

Query: 121 VGTDGSTVVVVGEKGRIQAFDAASGKPTWTAQAPSEVLSAPAVGEGLVVIRSIDNRVTAY 180
           VG+DGSTVVVVGEKGRIQAFDA +GKPTW AQA SEVLSAPAVGEGLVVIRSIDNRVTAY
Sbjct: 121 VGSDGSTVVVVGEKGRIQAFDANTGKPTWNAQAASEVLSAPAVGEGLVVIRSIDNRVTAY 180

Query: 181 DADSGSQRWMVQRNLPSLTLRNAPGIAIGAQTAFVALPGGRLSALALNNGGPRWEIPVGD 240
           DADSG+QRWMVQRN+PSLTLRNAPGI IG+QTAFVALPGGRLSALALNNGGPRWE+PVGD
Sbjct: 181 DADSGNQRWMVQRNVPSLTLRNAPGIVIGSQTAFVALPGGRLSALALNNGGPRWEVPVGD 240

Query: 241 PRGTTELERISDVSGMPALGATDICAASYQGRIGCFDLLNGNVRWLKEFSSDVGVNLDDA 300
           PRGTTELERISDVSG+PALG+ DICA +YQGRIGCFDLLNGNVRW+KEFSSDVGV LDD+
Sbjct: 241 PRGTTELERISDVSGVPALGSRDICAVAYQGRIGCFDLLNGNVRWIKEFSSDVGVTLDDS 300

Query: 301 YVYAADVGGTVTEFARDTGAVIWRNDRLKNRVLSAPIAIGKAVAVGDFQGYIHFLSREDG 360
           YVYAADVGG VTEF+RDTGAV+WRN+RLKNR LS+PI  GKAVAVGD++GYIHFLSREDG
Sbjct: 301 YVYAADVGGIVTEFSRDTGAVVWRNERLKNRQLSSPIGAGKAVAVGDYEGYIHFLSREDG 360

Query: 361 AFVARLATDGSAIQAPPVSTGSSVVFQTKSGTVVAVAAE 399
           +FVARL+TDGS IQAPPVSTGSSVVFQTKSGTVV+V  E
Sbjct: 361 SFVARLSTDGSPIQAPPVSTGSSVVFQTKSGTVVSVVTE 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,221,160
Number of extensions: 54017
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)