BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2918.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312250|ref|YP_003776342.1| transmembrane protease [Herbasp...   734   0.0  

>gi|300312250|ref|YP_003776342.1| transmembrane protease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/452 (90%), Positives = 420/452 (92%), Gaps = 3/452 (0%)

Query: 1   MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNDDGPPDLDQLWR 60
           MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGN+DGPPDLDQLWR
Sbjct: 1   MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNNDGPPDLDQLWR 60

Query: 61  DFNQRIAGMLGRKGGGSDGGNGGGGFNRGD-VKGAGIGVGVIAIIVVFLWLASGFFIVQE 119
           DFNQR++G+ GRKGGG     G GG      VKGAGIGVGVIA+IV FLWLASGFFIVQE
Sbjct: 61  DFNQRLSGLFGRKGGGGSSDGGNGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQE 120

Query: 120 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 179
           GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM
Sbjct: 121 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 180

Query: 180 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAEAAIREIVGRSKMDFVLYEGR 239
           LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAE AIREIVGRSKMDFVLYEGR
Sbjct: 181 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR 240

Query: 240 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ 299
           EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ
Sbjct: 241 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ 300

Query: 300 AYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMYLE 359
           AYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMY+E
Sbjct: 301 AYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMYIE 360

Query: 360 TMQQIFANTTKVMVDVKNGSNLLYLPLDKLIQQSVSDAAPAGAKSPASAAGQAAPSAAST 419
           TMQQIFANTTKVMVD K+GSNLLYLPLDKLIQQ+  +A  A A  PA++A   A SAA+ 
Sbjct: 361 TMQQIFANTTKVMVDAKSGSNLLYLPLDKLIQQTGPEA--AAAGKPAASAAAPAASAANP 418

Query: 420 NSTAGTDTVYSSELMRDSRNRDPRESREREVR 451
            S AG DTVYSSELMRD RNRDPRESREREVR
Sbjct: 419 ASNAGNDTVYSSELMRDMRNRDPRESREREVR 450


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,648
Number of extensions: 36919
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)