BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2917.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312249|ref|YP_003776341.1| HflC protein [Herbaspirillum se...   579   e-166

>gi|300312249|ref|YP_003776341.1| HflC protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  579 bits (1492), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 286/297 (96%), Positives = 294/297 (98%), Gaps = 1/297 (0%)

Query: 1   MGRLVTSVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNVM 60
           MGRLVTSVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNVM
Sbjct: 1   MGRLVTSVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNVM 60

Query: 61  YLDKRIQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFGADERRTQDRLSQIV 120
           YLDKRIQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFGADERRTQDRLSQIV
Sbjct: 61  YLDKRIQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFGADERRTQDRLSQIV 120

Query: 121 KAALNDEITKRTVREVISSQRNSVMDAIQARVANEAKQIGVEIIDVRLRRVDYVDQINNS 180
           KAALNDEITKRTVREVISSQRN+VMDAIQARVANEAKQIGVE+IDVRLRRVDYVDQINNS
Sbjct: 121 KAALNDEITKRTVREVISSQRNNVMDAIQARVANEAKQIGVEVIDVRLRRVDYVDQINNS 180

Query: 181 VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRESEKIRGAGDAKASQI 240
           VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRESEKIRGAGD+KASQI
Sbjct: 181 VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRESEKIRGAGDSKASQI 240

Query: 241 YAQAFGQNPDFYKFYRSLEAYRASFKSRHDVMVVDPSSEFFKYFKGIG-GATSAAKK 296
           YAQAFGQNP+F+KFYRSLEAYRASFK+RHDVMVVDPSSEFFKYFKGIG G+ S +KK
Sbjct: 241 YAQAFGQNPEFFKFYRSLEAYRASFKNRHDVMVVDPSSEFFKYFKGIGAGSASTSKK 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 791,408
Number of extensions: 28442
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)