BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2916.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase r...   769   0.0  
gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herba...    74   2e-14

>gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase
           regulatory subunit [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/386 (98%), Positives = 384/386 (99%)

Query: 1   MPNWLLPENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTD 60
           MPNWLLPENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTD
Sbjct: 1   MPNWLLPENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTD 60

Query: 61  LRTFKLVDQLSGRTLGVRADMTTQVARIDAHLLNRASVTRLCYAGSVLHTRPTGLHATRE 120
           LRTFKLVDQLSGRTLGVRADMTTQVARIDAHLLNRASVTRLCYAGSVLHTRPTGLHATRE
Sbjct: 61  LRTFKLVDQLSGRTLGVRADMTTQVARIDAHLLNRASVTRLCYAGSVLHTRPTGLHATRE 120

Query: 121 PIQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDE 180
           PIQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDE
Sbjct: 121 PIQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDE 180

Query: 181 AQLFGLLQAKDVPGLKEITAAYQEGTRAALLALPNLYGDISVIARARITLPALPGIAQAL 240
           AQLF LLQAKDVPGL+EITA YQEGTRAALLALPNLYGDISVIARARITLPALPGIAQAL
Sbjct: 181 AQLFALLQAKDVPGLQEITATYQEGTRAALLALPNLYGDISVIARARITLPALPGIAQAL 240

Query: 241 DELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVPGLPNAVVRGGRYDHVGEAF 300
           DELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVPGLPNAVVRGGRYDHVGEAF
Sbjct: 241 DELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVPGLPNAVVRGGRYDHVGEAF 300

Query: 301 GRARPATGFSLDLRELARLMPGAERKRAILAPWGRDAGLREKIAQLRQAGEIVIQSLPGH 360
           GRARPATGFSLDLRELARLMPGAERKRAILAPWGRDAGLREKIAQLRQAGEIVIQSLPGH
Sbjct: 301 GRARPATGFSLDLRELARLMPGAERKRAILAPWGRDAGLREKIAQLRQAGEIVIQSLPGH 360

Query: 361 ENDQDEFDCDRALDFSNGNWIIKNLG 386
           E+DQDEFDCDRALDFSNGNWIIKNLG
Sbjct: 361 EHDQDEFDCDRALDFSNGNWIIKNLG 386


>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 148/376 (39%), Gaps = 59/376 (15%)

Query: 10  IADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTFKL 66
           + D+LP++A   E     +    + YG++ +  P++E       G G+ TD+     +  
Sbjct: 16  MNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMYSF 75

Query: 67  VDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPTGLHATREPIQI 124
            D ++G  L +R + T  V R    H L      RL Y G +  H RP      R+  Q+
Sbjct: 76  TDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRHERPQ-RGRYRQFHQV 134

Query: 125 GAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDEAQLF 184
           GAE  G +G + DAE+  +        G+  IRL+L  +G       N     +  A L 
Sbjct: 135 GAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIG-------NAEERNKHRADLI 187

Query: 185 GLL-QAKDVPG--------------LKEITAAYQEGTRAALLALPNLYGDISVIARARIT 229
               Q KD+                L     A QE   AA    P L   +   +RA   
Sbjct: 188 AYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAA----PKLLDYLGEESRAHFE 243

Query: 230 LPALPGIAQALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GLPNAV 287
                G+ + L            H     TI+   +RG  Y++  +F       G    V
Sbjct: 244 -----GVQKILR-----------HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTV 287

Query: 288 VRGGRYDHVGEAF-GRARPATGFSLDLRELARLMPGAERKRA------ILAPWGRDAGLR 340
             GGRYD + E F G+  PA GF++ +  L  LM  +  + A       L   G DA L+
Sbjct: 288 CGGGRYDPLIEMFGGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQ 347

Query: 341 EKI--AQLRQAGEIVI 354
             +   +LR AG  V+
Sbjct: 348 SFVLAERLRTAGLDVV 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,284,181
Number of extensions: 57515
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)