BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2910.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312244|ref|YP_003776336.1| LysR family transcription regul... 523 e-150 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 188 5e-49 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 171 1e-43 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 164 6e-42 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 162 4e-41 >gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 523 bits (1347), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/293 (87%), Positives = 274/293 (93%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 MS+QSEELRTFVAVVEAGTLS+AAE+L QTTSGVSRALSRLE+KLGASLLTRTTRRMELT Sbjct: 1 MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG A L QARAIL AME A+D++R+R+RKPVGKLRVDA+ PFMLHCVVPHVG FRAAYP Sbjct: 61 EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 DIELELTTNDRFIDLVE RADIAIRIGELQDS+LHAR LSSARLN+VASP YLAR G PE Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPE 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 SVEALEQHQLIGFSQPD LNHWPLRH+AGDRYQTRPAIRASSGETIRHLALQGQGIACLS Sbjct: 181 SVEALEQHQLIGFSQPDQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 +FM+DADIAAG LVRLL DSG+RQKISAVYY++TQLSRRISCFLDFLQ KL Sbjct: 241 NFMSDADIAAGRLVRLLPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 293 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 161/286 (56%), Gaps = 2/286 (0%) Query: 6 EELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEA 65 + ++TFVAVVE+G+ +A +V Q+ VSR +S LE+ LG LL RTTRR+ LT+EG Sbjct: 5 QAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRV 64 Query: 66 LLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELE 125 + + +L ++ E V + S + G+LR+ A F + + P G F +P I L Sbjct: 65 YFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLN 124 Query: 126 LTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEAL 185 +T +DR IDL+E+ D+AIRI L DS + ARPL+ R+ A+P++LAR GTP + L Sbjct: 125 ITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAEL 184 Query: 186 EQHQLIGFSQPDILNHWPLRHTAGDRYQ--TRPAIRASSGETIRHLALQGQGIACLSSFM 243 + I +S + W RH GD Q R + ++G T R +A+ GQGIA F+ Sbjct: 185 RDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDFI 244 Query: 244 TDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 +A I AG LV L + + +G + + +Y T L ++ DFL Sbjct: 245 VNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFL 290 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/286 (36%), Positives = 156/286 (54%), Gaps = 6/286 (2%) Query: 7 ELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEAL 66 E+ F+AV + G+ AAE L + + VSR + LE +LG+ L+ RTTRR+ LTE G Sbjct: 6 EIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65 Query: 67 LHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELEL 126 L + + I+ A+E+A+D + S KP G LR++A + F + + P F +P+I L++ Sbjct: 66 LERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDI 125 Query: 127 TTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEALE 186 T +DR +D++++ D+AIRI L DSTL R L+S L++ ASP YL GTP L Sbjct: 126 TLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELA 185 Query: 187 QHQLIGFSQPDILNHWPLRHTAGD---RYQTRPAIRASSGETIRHLALQGQGIACLSSFM 243 QHQ I +S + W G R +R + ++G++ AL G GI +FM Sbjct: 186 QHQTISYSYNQSKDEWQFNGPEGPVSVRVSSR--LHVNNGDSCVQAALGGIGITRQPTFM 243 Query: 244 TDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 D + +G LV +L Y + I AVY L ++ LDFL Sbjct: 244 IDQYLRSGQLVSILGDYGAP-ELGIYAVYPSRAHLPAKMRAMLDFL 288 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 164 bits (416), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 158/295 (53%), Gaps = 10/295 (3%) Query: 3 IQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEE 62 +Q + F E G+ ++AAE L T + VSR++SRLE +LG L RTTR++ LT E Sbjct: 7 VQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTRE 66 Query: 63 GEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDI 122 GE Q + L + AE + + + P G LR+ P+ + ++P + F+ AYP I Sbjct: 67 GELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQI 126 Query: 123 ELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESV 182 E+EL+ +R +D VE+ D+AIR+G DS L A L A L + A+P YLAR G P S+ Sbjct: 127 EVELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARRGQPRSI 186 Query: 183 EALEQHQLIGFSQPDI--LNHWPLRHTAGD----RYQTRPAIRASSGETIRHLALQGQGI 236 LEQH I F P W + G +++R I + + A+ G G+ Sbjct: 187 AELEQHDCIQFILPSSGRAMPWIFKDAQGRDMDFHFKSRQRIHDDVLGCV-NWAIAGGGL 245 Query: 237 ACLSSFMTDADIAAGHLVRLLDHYDSGFR-QKISAVYYHNTQLSRRISCFLDFLQ 290 + F+ DA + G LV +L +G+R ++ S +Y HN LS R+ F++FL+ Sbjct: 246 FQIYHFIADAAVRRGELVEVLQQ--AGYRTRRFSILYPHNRHLSARVRAFVEFLR 298 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 150/288 (52%), Gaps = 2/288 (0%) Query: 4 QSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEG 63 Q +++ TF V G+LS+AA + + R L LEE+LG LL RTTR++ LT EG Sbjct: 3 QFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEG 62 Query: 64 EALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIE 123 A L + IL +E AE V RS + G+L + A F V P + +F A + D+ Sbjct: 63 AAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVT 122 Query: 124 LELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVE 183 L L NDR D++ + D+AIRI L DS L + L+ IVA+P YL R GTP+S + Sbjct: 123 LTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPD 182 Query: 184 ALEQHQLIGFSQPDILNHWPLRHTAG-DRYQTRPAIRASSGETIRHLALQGQGIACLSSF 242 L +H + S W LR + Y+ + + GE + + AL G+G+A S + Sbjct: 183 ELMRHNCLAMSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMW 242 Query: 243 MTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQ 290 A I AG LV +LD + + I AV+ L RI F+DFL+ Sbjct: 243 EVGAAIEAGELVTVLDKF-AAPAPSIYAVFAQRRHLPLRIRAFVDFLR 289 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 821,703 Number of extensions: 33046 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 76 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 76 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)