BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2909.p (1952 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he... 3665 0.0 >gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical protein [Herbaspirillum seropedicae SmR1] Length = 1938 Score = 3665 bits (9504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1785/1925 (92%), Positives = 1862/1925 (96%), Gaps = 6/1925 (0%) Query: 34 MWSLPAPPAQAANASVLSFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAVAGT 93 M LP PAQAA+A+V SFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAVAGT Sbjct: 14 MSLLPVKPAQAASATVQSFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAVAGT 73 Query: 94 ARWADDKNWVYDFERDLPPGTRCSFNLRADAKSVAGNAMSGKTRFQFSTGGPAVTRIEPY 153 ARWADD+NWVYDFERDLPPGTRCSF LRA+AKSVAGN++ GKTRFQFSTGGPAV+R++PY Sbjct: 74 ARWADDRNWVYDFERDLPPGTRCSFTLRAEAKSVAGNSVGGKTRFQFSTGGPAVSRVQPY 133 Query: 154 HGAQIAEDQAFILFQNGPATEASVREHLYCEAEGINERIPTKAVGQADRKALLQQFAKGV 213 GAQIAEDQAFILFQNGPATE SVR+HLYCEAEGINERIP KAVG+ADRKALLQQFAKGV Sbjct: 134 SGAQIAEDQAFILFQNGPATEPSVRQHLYCEAEGINERIPAKAVGEADRKALLQQFAKGV 193 Query: 214 DPAAVSIVQCQQRLPNEAHVKLVWDRGIAAASAPAIVTSKPQVFTFQVRSEFAASLSCQR 273 DPA+V+IVQCQQRLPNEAHVKLVWDRGIAAA+APA+VTS+PQVF FQVRSEFAASLSCQR Sbjct: 194 DPASVTIVQCQQRLPNEAHVKLVWDRGIAAANAPAVVTSQPQVFNFQVRSEFAASLSCQR 253 Query: 274 ENANAACSPILPVSLSFSAPVPRKLAEQVVMNASTGKIKPTLEGDKDEAVRELRFKPPFP 333 ENANAACSPILPV+LSFSAPVPRKLAEQVVMNA+TGKIKPTLEGDKDEAVRELRFKPPFP Sbjct: 254 ENANAACSPILPVTLSFSAPVPRKLAEQVVMNATTGKIKPTLEGDKDEAVRELRFKPPFP 313 Query: 334 EKSEFTISLPSGFKDEDGRTLTNAASFPLKSALADFPPLAKFAAAPFGIIELNADPALPV 393 EKS+FTISLPSGFKDEDGRTL NA +FPLKSALADFPPLAKF AAPFGIIELNADP LPV Sbjct: 314 EKSDFTISLPSGFKDEDGRTLANAGAFPLKSALADFPPLAKFPAAPFGIIELNADPTLPV 373 Query: 394 TLRRVEAGLQVRGKDGRAMPGQVADLKVDGDRAVIAWLTRLNQYHEKWGDPKKVDTRSIS 453 TLRRVEAGLQVRGKDGRAMPGQVADLKV+GD+AVIAWLTRLN+YHEKWGDPKKVDTRS+S Sbjct: 374 TLRRVEAGLQVRGKDGRAMPGQVADLKVNGDKAVIAWLTRLNKYHEKWGDPKKVDTRSVS 433 Query: 454 LLAKEPGVKKLDLPAQKEAKDGEWPFEVIGIPLKDPGFYVVELASQKLGASLLGKPQPMY 513 LLAKEPG KKLDLPAQK+AK+GEWPFEVIGIPLKDPGFYVVEL SQKLGASLLGKPQPMY Sbjct: 434 LLAKEPGAKKLDLPAQKDAKEGEWPFEVIGIPLKDPGFYVVELESQKLGASLLGKPQPMY 493 Query: 514 VRTSALVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDGTQLWQGKTNANGVA 573 VRTSALVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDG Q+WQGKTNA+GVA Sbjct: 494 VRTSALVTNLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDGAQIWQGKTNASGVA 553 Query: 574 MMPALEDACLNRGYSADNAAKINGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPT 633 MMPALEDAC NRGYS DNA KINGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPT Sbjct: 554 MMPALEDACANRGYSPDNADKINGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPT 613 Query: 634 DMDKSATTRATTIFDRTLLRAGETVSMKHVIRTETLQGFGLVRKEDLPTRIRISHLGSGQ 693 DMDKSAT RATT+FDRTL RAGETVSMKHVIRTETLQGFGL+RKEDLPTR+RISHLGSGQ Sbjct: 614 DMDKSATVRATTVFDRTLFRAGETVSMKHVIRTETLQGFGLMRKEDLPTRVRISHLGSGQ 673 Query: 694 QYQFPLTWRGNKSAETSFTLPKEAKLGTYEVVLDQGRVNANAS----EQT--GDDEDSYG 747 QYQFPLTWRGNKSAET+F LPK+AKLG+YEVVLDQG+V+ANAS EQ+ GD E YG Sbjct: 674 QYQFPLTWRGNKSAETTFVLPKQAKLGSYEVVLDQGKVDANASAEPTEQSDDGDYEGGYG 733 Query: 748 RGTYVTGTFRVEEFRLPLMQGRITPPKGAQVAIKELPLDLQLNYINGGAAANQTVQVSSL 807 RGTYVTG+FRVEEFRLPLMQGRITPPKGAQVA+KE+PLDLQLNYINGGAAANQ VQVSSL Sbjct: 734 RGTYVTGSFRVEEFRLPLMQGRITPPKGAQVAVKEMPLDLQLNYINGGAAANQAVQVSSL 793 Query: 808 LRSRSLDMAGYDGFSFEAPRSDDDSNADDQKIVADKLAVTLDKNGAGRAIIGKLPALQRP 867 LRSRSL++AGYDGFSF+APRSDDDSNADDQKIVADKLA+TLDKNGAGRA I KLPALQRP Sbjct: 794 LRSRSLNIAGYDGFSFDAPRSDDDSNADDQKIVADKLAITLDKNGAGRATISKLPALQRP 853 Query: 868 QELLTEMTYSDPNGEVQTISTVTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQ 927 QELLTEMTYSDPNGEVQTIS VTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQ Sbjct: 854 QELLTEMTYSDPNGEVQTISNVTPLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQ 913 Query: 928 AGVPVEIRGLARQTNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEA 987 AGVPVEIRG+AR+TNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEA Sbjct: 914 AGVPVEIRGIARKTNSHRKRMVGGFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEA 973 Query: 988 GNVDLIATAKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETASFQV 1047 GNV+LIA+AKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETA+FQV Sbjct: 974 GNVELIASAKDGNGNAAAARSSVWVTGRGEVWFDGENQDRIDILPEKKNYQPGETANFQV 1033 Query: 1048 RMPFRHATALVAVEREGVIDTRVVSLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVP 1107 RMPFR ATALVAVEREGVIDTRVV LSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVP Sbjct: 1034 RMPFRSATALVAVEREGVIDTRVVQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVP 1093 Query: 1108 WYSFFIWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDK 1167 WYSFFIWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDK Sbjct: 1094 WYSFFIWGWKEPINWWHEFREYQGPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDK 1153 Query: 1168 PSYPIRAVAKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVLRAMLQRRSYGV 1227 P+YPIRA+AKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVL AMLQRRSYGV Sbjct: 1154 PTYPIRAIAKVQVQVKLPNGKPAAGGEFALAAVDEALLELQPNGSWDVLHAMLQRRSYGV 1213 Query: 1228 ETSTAQMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLLLWKPSVTLDAEGRAQLEVPLN 1287 ETSTAQMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLL+WKP+VTLDAEGRAQL+VPLN Sbjct: 1214 ETSTAQMQVVGKRHYGKKATPAGGGGGRAPTRELFDTLLVWKPNVTLDAEGRAQLDVPLN 1273 Query: 1288 DALTSFRIVAIAENGIGDFGTGSISIRSTQDVQLISGLPPLVREGDHFNGTVTVRNTTTH 1347 DALTSFRIVAIAENGI DFGTGSISIRSTQDVQ+ISGLPPLVREGD FNG VTVRNTTTH Sbjct: 1274 DALTSFRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGDSFNGAVTVRNTTTH 1333 Query: 1348 DMNIKVTARAQGSTTASTLTLPEREVKIASGQAAEVMWPVQTPEGISQLAWDISAQEQGG 1407 DM IKV ARAQG T ASTLTLPEREVKIA+GQ+AEVMWPVQTPEGI+QLAW+ISAQEQGG Sbjct: 1334 DMTIKVAARAQGGTAASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQEQGG 1393 Query: 1408 QKARDAMKFTQRVVPAVPVTVQQATLFQLDKSAAINVARPADSLPGRGGLAVALKPSLAG 1467 QKARDAMKFTQRVVPAVPVTVQQATLFQLDK+AA++VARPADSLPGRGGLA++LKPSLAG Sbjct: 1394 QKARDAMKFTQRVVPAVPVTVQQATLFQLDKNAALDVARPADSLPGRGGLAISLKPSLAG 1453 Query: 1468 GSDALTRYFVNYPFACLEQKTSKAIGLRDEAAWQKIAADLPTYLDGDGLAYYFPPSDSGA 1527 GSDALTRYFVNYPFACLEQKTSKAIGLRDEAAWQKI ADLPTYLDGDGLAYYFPPSDSGA Sbjct: 1454 GSDALTRYFVNYPFACLEQKTSKAIGLRDEAAWQKIVADLPTYLDGDGLAYYFPPSDSGA 1513 Query: 1528 RRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMREFWSPQKDLDVRKLAA 1587 RRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMR+FWSPQKDLDVRKLAA Sbjct: 1514 RRGSDTLTAYLLAATNEAGYAIPQASRDKMLDGLAAFVEGKVMRDFWSPQKDLDVRKLAA 1573 Query: 1588 LEALSRYNRVQPAMLGSLQINPNSWPTSGLLDWIAILQRVNTLPERQKKLDEADQILRAR 1647 LEALSRYNRVQPAMLGSLQINPN WPTSGLLDWI ILQRV +P+RQKKLDEADQILRAR Sbjct: 1574 LEALSRYNRVQPAMLGSLQINPNVWPTSGLLDWIGILQRVPAIPDRQKKLDEADQILRAR 1633 Query: 1648 LNFQGTRMGFSNEEGDYWWWLMSSADANANRLILLELNNPAWRDDLPRLVAGAIGRQQRG 1707 LNFQGTRMGFSNEEGDYWWWLMSS DANANRLILLELNNPAWR+D+PRL+AGAIGRQQRG Sbjct: 1634 LNFQGTRMGFSNEEGDYWWWLMSSGDANANRLILLELNNPAWREDMPRLIAGAIGRQQRG 1693 Query: 1708 HWSTTTANVWGSLALEKFARKFESEPVTGTTRVTLEQGGATSTTQSLAWSGAANGGKLQL 1767 HWSTTTANVWGSLALEKFARKFESEPVTG TR TLEQ GA++ TQSLAWSGA NGGKLQL Sbjct: 1694 HWSTTTANVWGSLALEKFARKFESEPVTGATRATLEQNGASAATQSLAWSGAPNGGKLQL 1753 Query: 1768 PWPQDHAQAGSVRFAQEGNGKPWVTLQSLAAVPLTQPFAAGYRITRKVEAIEQKQAGVYT 1827 PWP+ +AQ GSVR AQEGNGKPWVTLQSLAAVPL QPFAAGYRITRKVEAIEQKQAGVYT Sbjct: 1754 PWPEGNAQGGSVRLAQEGNGKPWVTLQSLAAVPLKQPFAAGYRITRKVEAIEQKQAGVYT 1813 Query: 1828 RGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSTIAQGKQDAPRDRGMGWLA 1887 RGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDS IAQGKQDAPR+RGMGWLA Sbjct: 1814 RGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSAIAQGKQDAPRERGMGWLA 1873 Query: 1888 YEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFNLPPTRVEAMYAPEMFGEIPNGKLV 1947 YEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFN+PPTRVEAMYAPEMFGE+PNGKLV Sbjct: 1874 YEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFNMPPTRVEAMYAPEMFGEVPNGKLV 1933 Query: 1948 VKAAQ 1952 VKAAQ Sbjct: 1934 VKAAQ 1938 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 6,145,782 Number of extensions: 266445 Number of successful extensions: 724 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 723 Number of HSP's successfully gapped: 1 Length of query: 1952 Length of database: 1,619,870 Length adjustment: 100 Effective length of query: 1852 Effective length of database: 1,146,370 Effective search space: 2123077240 Effective search space used: 2123077240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 138 (57.8 bits)