BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2907.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 468 e-133 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 249 2e-67 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 241 3e-65 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 241 3e-65 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 225 3e-60 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 468 bits (1203), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/243 (97%), Positives = 240/243 (98%) Query: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV Sbjct: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 Query: 61 KAQRGRVLLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVA 120 KAQRGRVLL+GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENL LGAYTRKDKDGVA Sbjct: 61 KAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVA 120 Query: 121 RDLEWVYSIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 RDLEWVYS+FP LK+RA GLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ Sbjct: 121 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 Query: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY Sbjct: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 Query: 241 LGG 243 LGG Sbjct: 241 LGG 243 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 249 bits (635), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/233 (51%), Positives = 169/233 (72%), Gaps = 1/233 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +LQ + + YG IEA+ G+SL++ +GEI L+GANGAGK+T L+ + G +A GRV+ Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 70 NGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSI 129 GQD+ Q+ H I+ G+ EGR +LTV ENL +GA+ + + + + +E+V+ + Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASN-EAIEQGIEYVFGL 120 Query: 130 FPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FPRLK RA AG +SGGEQQMLAIGRALM+KP++LLLDEP++GLAPL+I +IF I++ I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++G+TV LVEQN +AL +A RGYVLE G +V+ D+GANLL N V +AYLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 241 bits (616), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 IL+V+ L+VAYG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 68 LLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ L +V+ + V EGR T ++++ENL +GAYT DK +A D++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 128 SIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 ++FPRLK RA +AG LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++ G+T+LLVEQN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 241 bits (616), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 IL+V+ L+VAYG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 68 LLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ L +V+ + V EGR T ++++ENL +GAYT DK +A D++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 128 SIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 ++FPRLK RA +AG LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++ G+T+LLVEQN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 225 bits (573), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 163/240 (67%), Gaps = 8/240 (3%) Query: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 L + ++ V Y H+ V KG+SL + EG+I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 26 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 Query: 69 ----LNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDG-VARDL 123 G+ + +M+P+ +V+ GV+QV EGR LTVEENL GAYTR + V +L Sbjct: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 145 Query: 124 EWVYSIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIF 183 E +Y FPRLK R +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF Sbjct: 146 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 Query: 184 RIVQEIN-KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 IV+++N K ++ LL EQN ALR A GY+LE G++V+E + + L N V E YLG Sbjct: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,396 Number of extensions: 30422 Number of successful extensions: 468 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 140 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)