BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2906.p (253 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 501 e-143 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 259 1e-70 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 259 1e-70 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 239 1e-64 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 203 1e-53 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 501 bits (1291), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/253 (96%), Positives = 250/253 (98%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 MLLQLNDISKNFGGLQVLQGVNFNV+QGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMH+HLNYGVAS+L NLG F Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 R AE++ARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 241 QEVIEAYLGKEEA 253 QEVIEAYLGKEEA Sbjct: 241 QEVIEAYLGKEEA 253 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 259 bits (662), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 129/248 (52%), Positives = 167/248 (67%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL++ D+SK FGGLQ L GV +++G+I+GLIGPNGAGKTT FN+ITGL + +G+ Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + APH++ + GIARTFQNIR+F EMT+LENV+VG H V +F R Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 E RE++ +LL +V + A A LSYG+QR+LE ARALAT P+LL LDEP AGM Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK L +V I+ G TI +IEHD++ +MGLC RI VL++GK IAEG P ++ N Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 242 EVIEAYLG 249 VIEAYLG Sbjct: 245 AVIEAYLG 252 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 259 bits (662), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 129/248 (52%), Positives = 167/248 (67%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL++ D+SK FGGLQ L GV +++G+I+GLIGPNGAGKTT FN+ITGL + +G+ Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + APH++ + GIARTFQNIR+F EMT+LENV+VG H V +F R Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 E RE++ +LL +V + A A LSYG+QR+LE ARALAT P+LL LDEP AGM Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK L +V I+ G TI +IEHD++ +MGLC RI VL++GK IAEG P ++ N Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 242 EVIEAYLG 249 VIEAYLG Sbjct: 245 AVIEAYLG 252 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 239 bits (611), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 114/251 (45%), Positives = 172/251 (68%), Gaps = 1/251 (0%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +L+++++S FGGL + GV+ V++ E+F +IGPNGAGKTTVFN I+G R +SG I Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + I H++ ++G+ RTFQNIR+FK MT++EN++V H+ +N + S L +R Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 ++EQ+A +RA L + L A+ A +LSYG QR++E AR + TKP+LLLLDEP AG+ Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 182 NPAEKTELMSEIVNI-KQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 NP EK EL I + ++ G + +IEHDM +MG+ +RI V+ GK I GTP+Q++++ Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 241 QEVIEAYLGKE 251 + VI+AYLG+E Sbjct: 248 ERVIKAYLGEE 258 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 203 bits (516), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 161/250 (64%), Gaps = 1/250 (0%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 ++L L +IS +FGG++ L ++F+V++ EI +IGPNGAGK+++ N+I G+ G I Sbjct: 41 VILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRIL 100 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 + + P I +GIARTFQNI +FK MT+L+N++ G + + G+ S G Sbjct: 101 YRGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAA 160 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 R E + R + +++ ++ + H L YG Q+++E ARALA +P +LLLDEP+AG Sbjct: 161 RNEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAG 220 Query: 181 MNPAEKTELMSEIVNI-KQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 MN EK ++ I+++ Q G TI +IEHDM VM + +R+ VL++GK I +GTP+++ Sbjct: 221 MNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMG 280 Query: 240 NQEVIEAYLG 249 N++VI+AYLG Sbjct: 281 NEDVIKAYLG 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 701,266 Number of extensions: 27068 Number of successful extensions: 489 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 143 Length of query: 253 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 170 Effective length of database: 1,226,865 Effective search space: 208567050 Effective search space used: 208567050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)