BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2900.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312231|ref|YP_003776323.1| dienelactone hydrolase [Herbasp...   124   1e-29
gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...    89   4e-19

>gi|300312231|ref|YP_003776323.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 75/98 (76%)

Query: 1   MRNWAKPLAAFCIAASLATIGTWAQAAANSASPQPLEARRVSLTSVDDKGGKATALYGVW 60
           MR W  PLA FC AA +        AA NSA P PLEARRV+LTSVD  GGKAT+LYGVW
Sbjct: 29  MRIWGTPLATFCAAAFMLAASALTHAAPNSAPPAPLEARRVALTSVDGNGGKATSLYGVW 88

Query: 61  IKARKSSSSKGPYPTVIALHGCGGLYSIIKDGRGEFTP 98
           IKARKS +SKGPYPTVIALHGCGGLYSI+KDGRG   P
Sbjct: 89  IKARKSLNSKGPYPTVIALHGCGGLYSIVKDGRGGIHP 126


>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 100/229 (43%), Gaps = 29/229 (12%)

Query: 66  SSSSKGPYPTVIALHGCGGLYSIIKDG--------------RGEFTPRHLAMARVLTDAG 111
           + +  GP+P V+ LHG  G YS   +G                  + RH A A    + G
Sbjct: 90  TPAGAGPHPAVVMLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERG 149

Query: 112 YNVLFPDSFTPRG-----RRSTCQDSVAQREISAMN-RRFDVQAAMHWVTSQPDVDVKRI 165
           Y  L  DS+ PRG      R T   +  + E++ +  R  D + A+ W+  + DV+  RI
Sbjct: 150 YLALLVDSYGPRGVAHGFGRHT-HGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARI 208

Query: 166 ALLGWSHGASTLLASINLAETDVAVRKIQPRAAVAFYPDCRPYAKAGEPFKPAAPLLILM 225
            L GWS+GAST L  +    + +         A+ FYP C P A      +   P+ +L+
Sbjct: 209 LLQGWSNGASTALNVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLL 268

Query: 226 GENDDWTPPQAC-----EAIEQKMQGSDTEIALRLYPDTYHDFDAPGLP 269
           G  D    PQ C     +AI  +   S     + LYP   HDFD PG P
Sbjct: 269 GAADQEVSPQRCLRVLRQAIPMRRNSSPV---VTLYPGATHDFDDPGRP 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,008,409
Number of extensions: 41679
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)