BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2899.p
         (969 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase...  1748   0.0  

>gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 970

 Score = 1748 bits (4527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/971 (91%), Positives = 931/971 (95%), Gaps = 3/971 (0%)

Query: 1   MATTNPTKRSARSTPSTPSTAPA--VSTARAPAAKRSPATDKDAPLKEDIRLLGRLLGEV 58
           MATTNPTKRSARS PST  +A A   +T+  P+ K +   DKDAPLKEDIRLLGRLLGEV
Sbjct: 1   MATTNPTKRSARSAPSTSRSAGANPAATSITPS-KPARGADKDAPLKEDIRLLGRLLGEV 59

Query: 59  VREQEGDDVFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFSHL 118
           +REQEGD+VFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFSHL
Sbjct: 60  LREQEGDEVFEVVETIRQTAVRFRRESDAKAGAELDKLLKKLTRDQTNSVVRAFSYFSHL 119

Query: 119 ANIAEDQHHNRRRRAHLLAGSQAQPGSVAYALSRLDDAGVSGAQVRSFLKEALVSPVLTA 178
           ANIAEDQHHNRRRRAHLLAGS+AQPGSVAYALSRLDDAGVSGAQVR+FLKEALVSPVLTA
Sbjct: 120 ANIAEDQHHNRRRRAHLLAGSEAQPGSVAYALSRLDDAGVSGAQVRNFLKEALVSPVLTA 179

Query: 179 HPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKLTV 238
           HPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKLTV
Sbjct: 180 HPTEVQRKSILDAEREIARLVAERDLPLTPRELRHNTELLRARIATLWQTRMLRYTKLTV 239

Query: 239 ADEIENALSYYRITFLRELPALYDDIEAEIDSQFPSRAKARAAELPPYLQMGSWIGGDRD 298
           ADEIENALSYYR TFLRELPALY+DIEAEIDSQFP+R K+R  ELPPY+QMGSWIGGDRD
Sbjct: 240 ADEIENALSYYRTTFLRELPALYEDIEAEIDSQFPARGKSRPTELPPYVQMGSWIGGDRD 299

Query: 299 GNPNVNAATMQHALKRQSTTIFDYYLDEVHTLGAELSISTLMVDASPELLALADASPDHS 358
           GNPNVNA TMQHAL+RQST +FDYYL+EVHTLGAELSISTLMVDASPELLALA  SPDHS
Sbjct: 300 GNPNVNAGTMQHALQRQSTVVFDYYLEEVHTLGAELSISTLMVDASPELLALAATSPDHS 359

Query: 359 EHRADEPYRRALIGIYARLAATARSLGVVNILRQEIGSAAPYANPAECVAELEVLVSSLQ 418
           EHRADEPYRRALIGIYARLAATAR+LG +NILRQE+G+AAPY  P +CVAEL+VLVSSLQ
Sbjct: 360 EHRADEPYRRALIGIYARLAATARALGAINILRQEVGAAAPYETPEQCVAELDVLVSSLQ 419

Query: 419 AHHGAALIKPRLAGVKRAVEIFGFHLATLDMRQSSDIHERVLADLLAKAQVESHYADLSE 478
           AHHGAAL+KPRLAG+KRAVEIFGFHLATLDMRQSSDIHERVLADL AKAQVE+ YA L+E
Sbjct: 420 AHHGAALVKPRLAGLKRAVEIFGFHLATLDMRQSSDIHERVLADLFAKAQVEADYAALNE 479

Query: 479 ERKITLLLGELAQPRLLYSPYLQYAEETESELTILRAAREIRRRYGERAIRNYIISHTET 538
           ERKI LLLGEL++PRLL+SPYL+Y+E+T+SEL+ILRAAREIRRRYGERAIRNYIISHTET
Sbjct: 480 ERKIALLLGELSRPRLLHSPYLEYSEQTDSELSILRAAREIRRRYGERAIRNYIISHTET 539

Query: 539 LSDLLEVLLLQKETGLLHIEGKQLQELELMVIPLFETIPDLRCAAQIMRGWLTLPQVKGL 598
           LSDLLEVLLLQKETGLLHIEG QL+ELELMVIPLFETIPDLRCAA+IMRGWL+LPQVKGL
Sbjct: 540 LSDLLEVLLLQKETGLLHIEGNQLRELELMVIPLFETIPDLRCAAEIMRGWLSLPQVKGL 599

Query: 599 IAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNEVGVKLRLFHGRGGTVGR 658
           IAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNE GVKLRLFHGRGGTVGR
Sbjct: 600 IAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVELFNEAGVKLRLFHGRGGTVGR 659

Query: 659 GGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKFSNPDIGRRNLELLVAATLEASLMPTG 718
           GGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKF+NP+IGRRNLELLVAATLEASLMPT 
Sbjct: 660 GGGPSYQAILAQPPGTVNGQIRLTEQGEIIASKFANPEIGRRNLELLVAATLEASLMPTN 719

Query: 719 SDDKEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSRPA 778
           +DDKEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSRPA
Sbjct: 720 ADDKEARKLAEFERVMEELSERAYRAYRNLVYETPGFTDYFFAATPIAEIAQLNIGSRPA 779

Query: 779 SRKATQRIEDLRAIPWGFSWGQCRLLLPGWYGFGSAVSGWLEQAGNAKESAKRMSTLRAM 838
           SRKATQRIEDLRAIPWGFSWGQCRLL PGWYGFGSAVSGWLE AGNAKE+A+R++TLRAM
Sbjct: 780 SRKATQRIEDLRAIPWGFSWGQCRLLFPGWYGFGSAVSGWLEDAGNAKEAARRLATLRAM 839

Query: 839 CKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLRTSIFGRITDEHERTSTMLSAI 898
           CKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLR +IFGRITDEHERTS MLS I
Sbjct: 840 CKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVADRKLRNAIFGRITDEHERTSAMLSTI 899

Query: 899 TGSKERLAGNPLLARSIKNRFAYLDPLNHLQVELIKRHRATAAAKRTPEERVQRGIHLTI 958
           TGSKERLA NPLLARSIKNRFAYLDPLNHLQVELIKRHRAT AAKRTPEERVQRGIHLTI
Sbjct: 900 TGSKERLAANPLLARSIKNRFAYLDPLNHLQVELIKRHRATVAAKRTPEERVQRGIHLTI 959

Query: 959 NGVAAGLRNTG 969
           NGVAAGLRNTG
Sbjct: 960 NGVAAGLRNTG 970


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,615,809
Number of extensions: 103290
Number of successful extensions: 350
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 1
Length of query: 969
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 875
Effective length of database: 1,174,780
Effective search space: 1027932500
Effective search space used: 1027932500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)