BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2892.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   501   e-143
gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   137   2e-33

>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  501 bits (1290), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 311/400 (77%), Positives = 332/400 (83%), Gaps = 25/400 (6%)

Query: 1   VNKTSLAWAACLVFSLVSGMPAQAQSNDPVAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 60
           +NK++LAWAACLVFSLVSGMPAQAQS  P APAVYTQQQLDQMLAPVALYPDSLLAQVLM
Sbjct: 1   MNKSTLAWAACLVFSLVSGMPAQAQSAYPPAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 60

Query: 61  ASTYPLEVVQAQRFVEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMLNDRLDWMQ 120
           ASTYPLEVVQAQRF+EARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAM+NDRLDWMQ
Sbjct: 61  ASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMMNDRLDWMQ 120

Query: 121 QLGQAFLAQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQEDVIEIVPVNPQVVYVPYY 180
           QLGQAFL QQPAVMDTVQNLRERARIAGTLESSPQQRVVVQ+D IEIVPVNPQVVYVPYY
Sbjct: 121 QLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVNPQVVYVPYY 180

Query: 181 NPTVVYGSWWWPSAPPLVWVPPPRYRPPSYSSGFSASISFSSGIGVMSAFFGDARPDWRQ 240
           NP VVYG WWWPSAPP+VW PPPRYRPPSY+ GFSASISFS+GIGVMSA FG+ARPDWR+
Sbjct: 181 NPVVVYGDWWWPSAPPVVWAPPPRYRPPSYNPGFSASISFSTGIGVMSAVFGEARPDWRE 240

Query: 241 RQVLVTQTRINNITNNVTNVTNVNNTNVVNNRIVNNNVTINRNVAFNSRPVVWHHDARYG 300
           RQV+VTQTRI N+ N   NV N            NNNVTINRNV  N RPVVWHH+ RYG
Sbjct: 241 RQVMVTQTRITNVNNINNNVVNNRIV--------NNNVTINRNVTVNQRPVVWHHEGRYG 292

Query: 301 GGR-------FAQQQAPVLNPPARPAPVAQMQPPAQPQWREHGPQAPAFQPGQAHALPVV 353
            GR        A Q AP  +P  +P   A M     P WR+HGP     QPG A  LPV 
Sbjct: 293 AGRAVPPPPALAAQAAPRPSPQGQPQAAAGM-----PSWRDHGP-----QPGPARPLPVA 342

Query: 354 DNVQQRLAQQDQIRQRQAFEQQRQREQQANDQQRQREQMI 393
           DN QQR+AQQDQ+RQRQA EQQRQREQQANDQQRQREQ++
Sbjct: 343 DNPQQRIAQQDQMRQRQAVEQQRQREQQANDQQRQREQIV 382


>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 118/229 (51%), Gaps = 38/229 (16%)

Query: 38  QQLDQMLAPVALYPDSLLAQVLMASTYPLEVVQAQRFVEARPGLQGDGLARAVAPMPWDP 97
           +QL QM+AP+AL+PD L+AQVL  +TYP +VV A +++     L+GD L  A    PWD 
Sbjct: 57  EQLSQMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDV 116

Query: 98  SVKALVQFPSVLAMLNDRLDWMQQLGQAFLAQQPAVMDTVQNLRERARIAGTLESSPQQR 157
           SVK+L  FP+VL+ +    DW + LG AF+     VM+ +Q LR +A+ AG L+SSPQ R
Sbjct: 117 SVKSLTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLR 176

Query: 158 VVVQE-------------------------DVIEIVPVNPQVVYVPYYNPTVVYGSWWWP 192
           V   E                           I I    P  VYVP Y+P VVYG+    
Sbjct: 177 VSTTERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGA---- 232

Query: 193 SAPPLVWVPPPRYRPPSYSSGFSASISFSSGIGVMSAFFGDA---RPDW 238
              P+   P   YRPPS+ +      + S G+GV   F G+A     DW
Sbjct: 233 ---PVPVYPGYVYRPPSHVADEVVVGALSFGVGV---FVGEAISHHSDW 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,366
Number of extensions: 26397
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)