BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2890.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 678 0.0 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 544 e-156 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 496 e-141 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 395 e-111 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 390 e-109 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/511 (72%), Positives = 437/511 (85%) Query: 1 MTITNKLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 MTI KL LL LAV+LG+ASL+ + IYQS ++A AASY+S N VPSLL LGDAGEA F I Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 61 RVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKENLTDATDTQLLQADRDAFAD 120 RVGIW+YAA+TD +R +LEK+M+ + ++VLAAF+RY +E+++D TD +LL+ADR AFAD Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 121 YEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAAQSAQDS 180 YEK R VL +GAE + E+AL+A+EQLVVPPGDKLI ALA HR+Y EQLGRQ ++A+ Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 181 LHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLSTRIRGRANDE 240 L S+ YQA+L+SL+V AIVG S++ISR IS +L +AI+ A AIA GDLS++++ DE Sbjct: 181 LQSSTYQAILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDE 240 Query: 241 VGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEETASA 300 VGQL+ AI +MT SLV IV NVR S + I++AS+EIA+GNLDLS+RTEAQAGSIEETASA Sbjct: 241 VGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASA 300 Query: 301 MEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLKIVDIISVI 360 MEQLT+TV+QNADNA +A+TLASSASSVA+EGG VQ+VV TM AIN+SSLKIVDIISVI Sbjct: 301 MEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVI 360 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIKELIDDSV KV Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKV 420 Query: 421 ESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQQNA 480 +SGSRLV QAG+TM+QVV SV+RV+DIV DI+ AS EQSDGI QVNQAIGMMDQ TQQNA Sbjct: 421 QSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 480 Query: 481 ALVEQAAAASQSLREQAVNLAQAVGVFRLER 511 ALVE+AAAASQSLREQA LAQAV VFRLER Sbjct: 481 ALVEEAAAASQSLREQAKGLAQAVSVFRLER 511 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 544 bits (1401), Expect = e-156, Method: Compositional matrix adjust. Identities = 311/541 (57%), Positives = 399/541 (73%), Gaps = 8/541 (1%) Query: 1 MTITNKLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 MTI KL LL++AVVLG+ + +YQS++IA +A Y++T+ +PS+L L A +A++ I Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 61 RVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKENLTDATDTQLLQADRDAFAD 120 R+ I RY A R K +M+ +K F+++++ ++D TD ++L+ADR FA+ Sbjct: 91 RLNIARYVIEPTA--REKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAE 148 Query: 121 YEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAAQSAQDS 180 YEK R ++ LG+ GK + A+E+ + P G +L+ L H+ YNEQLGRQ A++A + Sbjct: 149 YEKHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEH 208 Query: 181 LHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLSTRIRGRANDE 240 L ++Y + + +V +V +S+++ R I +L A + A I GDLS++I R DE Sbjct: 209 LQLSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGRDE 268 Query: 241 VGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEETASA 300 V QLM ++Q+MT SLV+I+ V +SA+TI+TA+ EIA+GNLDLSSRTEAQAGS+EET SA Sbjct: 269 VTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSA 328 Query: 301 MEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLKIVDIISVI 360 M QLT+TV+QNADNA++A+ LA SAS VA + G V +V+ TM AINASSLKIVDIISVI Sbjct: 329 MGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVI 388 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIKELIDDSV+KV Sbjct: 389 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVNKV 448 Query: 421 ESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQQNA 480 +SGSRLV QAGSTM++VV SVRRV+ IV DI+ AS EQSDGI QVNQAIGMMDQ TQQNA Sbjct: 449 QSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 508 Query: 481 ALVEQAAAASQSLREQAVNLAQAVGVFRLERQTQLIGEGSVGPAAEGGTAIAQREVLALP 540 ALVE+AAAASQSLREQA LAQAV VFRLER + S P E Q +LAL Sbjct: 509 ALVEEAAAASQSLREQAKGLAQAVSVFRLERSAEAPQPESTEPVQE------QPAMLALT 562 Query: 541 A 541 A Sbjct: 563 A 563 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/514 (53%), Positives = 373/514 (72%), Gaps = 5/514 (0%) Query: 1 MTITNKLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 ++I N+L +L+ AV++G L G ++ + N+ AS+ S N+VPSLL L + + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKENLTDATDTQLLQADRDAFAD 120 R+ WRY A T++ R +E S + ++V A ++Y++E L DATD +LL+A R ++ + Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 121 YEKSRQTVLALGAEGKTEQA--LQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAAQSAQ 178 ++KS L L G+ +A L A Q P D+L A+ R YNE++ + A AQ Sbjct: 123 FDKSLAEALKLANAGQWNEARALLANNQ---PVIDRLNKAMTELRAYNEKISQAGAHRAQ 179 Query: 179 DSLHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAARAIATGDLSTRIRGRAN 238 +++ +A A+L+S V A+V ++ ++I+R I+ +L EA++ A IA GDL+ I + Sbjct: 180 ETMAAARLHAILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSST 239 Query: 239 DEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEETA 298 DE+G LM A+ +M +LV IV+ VR +T+ AS++IA GN+DLS+RTE QA S+E+TA Sbjct: 240 DEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTA 299 Query: 299 SAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLKIVDIIS 358 +A E+LTSTV+QNA+NA +A+ LAS+AS +A EGG V+QVV TM I +SSL I DIIS Sbjct: 300 AATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIIS 359 Query: 359 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVS 418 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK+LIDDSVS Sbjct: 360 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVS 419 Query: 419 KVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQQ 478 KVE+GS+LV AG+TMQQVVESVRRVTD+V +I+AAS EQS GI QVNQAI MDQ+TQ+ Sbjct: 420 KVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQE 479 Query: 479 NAALVEQAAAASQSLREQAVNLAQAVGVFRLERQ 512 NAALVE+A AA+QSL+EQA L +AV VF+L ++ Sbjct: 480 NAALVEEATAAAQSLQEQARQLERAVNVFKLRQE 513 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 267/524 (50%), Positives = 351/524 (66%), Gaps = 25/524 (4%) Query: 1 MTITNKLRLLLLAVVLGMASLTGMSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 + I+ KL L VV +A+L SI Q +++ A++ STN +PS+ L A+ R+ Sbjct: 7 LRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMSRL 66 Query: 61 RVGIWRYAASTDAATRAKLEKSMSLESEKVLAAFERYQKENLTDATDTQLLQADRDAFAD 120 R ++ + DA ++E+ M ++ + A Y + +++ + + A Sbjct: 67 RSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQ-ISEPEEKAIYPEVEKLIAT 125 Query: 121 YEKSRQTVLALGAEGKTEQA--LQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAAQSAQ 178 + ++AL +GK E+A LQ E + A+R +Q+ + AA + + Sbjct: 126 FVSEHDKIIALSRQGKDEEARNLQRGE------------STKAYRTSLQQIDKLAAVNDK 173 Query: 179 -----DSLHSALY-QAVLMSLV-VCAIVGM---VSVVISRTISSALGEAIQAARAIATGD 228 + A+Y QA L +V V A +G+ ++V +SR I+ L EA+ A+ +A GD Sbjct: 174 GADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGD 233 Query: 229 LSTRIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTE 288 L+TRI DE GQL+ A++ M DSLV IV VR TI TAS EIA+GNLDLSSRTE Sbjct: 234 LTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTE 293 Query: 289 AQAGSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINA 348 QA S+EETASAME+LTSTV+QNADNA++AN LA SAS VA++GG V QVV+TM +INA Sbjct: 294 EQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINA 353 Query: 349 SSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 408 SS KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKE Sbjct: 354 SSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKE 413 Query: 409 IKELIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQA 468 IKELI+ SV++V+ GS+LV +AG TM +VV+SVRRVTDIVG+I++AS EQS+GI QVN A Sbjct: 414 IKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLA 473 Query: 469 IGMMDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLERQ 512 I MD+ TQQNAALVE+AAAA+QSL+EQA L Q VG F+LE+Q Sbjct: 474 IAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQ 517 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/408 (57%), Positives = 304/408 (74%) Query: 102 LTDATDTQLLQADRDAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAA 161 L+ A +L Q+ ++A + Y R + L + K E+A++ + V+P DK L Sbjct: 106 LSTARGRELFQSIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQ 165 Query: 162 HRRYNEQLGRQAAQSAQDSLHSALYQAVLMSLVVCAIVGMVSVVISRTISSALGEAIQAA 221 + + L Q+ +D+ SA+ + +S V A+ + + +++R+I+ L EA+ A Sbjct: 166 FVAFQKSLMEQSVTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVA 225 Query: 222 RAIATGDLSTRIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNL 281 A+A GDL+ +I + DE G L+ A++ M DSL RIVS VR + TI+TASAEIA GNL Sbjct: 226 SAVAAGDLTVQIGATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNL 285 Query: 282 DLSSRTEAQAGSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVE 341 DLSSRTE QAG++EETASAME+LTSTV+QNADNA++AN+LA++AS VA +GG V QVV+ Sbjct: 286 DLSSRTEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQ 345 Query: 342 TMAAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 401 TM IN +S KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQR Sbjct: 346 TMGEINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQR 405 Query: 402 SAAAAKEIKELIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDG 461 SA+AAKEIK LIDDSVS+V++GSRLV QAG+TM +VV SVRRVTD+V +I+AAS EQSDG Sbjct: 406 SASAAKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDG 465 Query: 462 IVQVNQAIGMMDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRL 509 I Q+N AI MDQ TQQNAALVE+AAAA+QSL+EQ+ L+ V VF+L Sbjct: 466 IEQINHAITQMDQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,213,178 Number of extensions: 41341 Number of successful extensions: 581 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 71 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)