BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2889.p (539 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 585 e-168 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 531 e-152 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 451 e-128 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 384 e-108 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 374 e-104 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 585 bits (1507), Expect = e-168, Method: Compositional matrix adjust. Identities = 319/512 (62%), Positives = 388/512 (75%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 MTIA+KLYLLI AV+L + + +YQSHR++ +A YS +T+PS+L L+ A +++Y I Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 61 RLNVARYFIEPTTREKIFPILEVLHEKTQAAFLKYEKECISDAKDEKLLEQDRVAFAAYE 120 RLN+ARY IEPT REK + LH+K Q F ++E+ CISD D ++LE DR FA YE Sbjct: 91 RLNIARYVIEPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAEYE 150 Query: 121 KARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAASILQ 180 K R + L G+ L+ A EE + P G RLM L EHK YNEQLGRQ + A LQ Sbjct: 151 KHRMAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEHLQ 210 Query: 181 SSIVITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLTSKIDHAAHDEIG 240 SI +T + + L+ +V+ SLLLVR I SL AT +AD I R DL+S+I DE+ Sbjct: 211 LSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGRDEVT 270 Query: 241 HLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSLEETVTAMG 300 L+ +L+RM SL +I+G V DS +TI+ A EIASGNLDLSSRTEAQAGSLEETV+AMG Sbjct: 271 QLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMG 330 Query: 301 QLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIVGIISVIDG 360 QLT TV+QNADNA QA+ELA SAS +A QAG VV+EV++TM+AI+ASSLKIV IISVIDG Sbjct: 331 QLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDG 390 Query: 361 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELIDDSVHKVGT 420 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAREIKELIDDSV+KV + Sbjct: 391 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVNKVQS 450 Query: 421 GSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDDATQQNAAL 480 GS LV +AG++ME+VV SVRRV+ IV +IS AS EQS GI Q++QAIG MD TQQNAAL Sbjct: 451 GSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAAL 510 Query: 481 VEQAAAASQSLQEQAAHLVEAVGVFRLNRQAQ 512 VE+AAAASQSL+EQA L +AV VFRL R A+ Sbjct: 511 VEEAAAASQSLREQAKGLAQAVSVFRLERSAE 542 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 531 bits (1368), Expect = e-152, Method: Compositional matrix adjust. Identities = 313/511 (61%), Positives = 383/511 (74%), Gaps = 2/511 (0%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 MTIAKKL+LL AVIL L +L+ L IYQS V+ AASYS+ NTVPS+L L A E+ + I Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 61 RLNVARYF--IEPTTREKIFPILEVLHEKTQAAFLKYEKECISDAKDEKLLEQDRVAFAA 118 R+ + +Y +P +R ++ + H++ AAF +Y +E ISD D KLLE DR AFA Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 119 YEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAASI 178 YEK R L + + E RA E+L+VP G++L+ AL EH++Y EQLGRQ ++ A I Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 179 LQSSIVITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLTSKIDHAAHDE 238 LQSS VSLL+ A+V SLL+ R I SL A VA+AI+ DL+SK+ DE Sbjct: 181 LQSSTYQAILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDE 240 Query: 239 IGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSLEETVTA 298 +G L+ A+ M SL I+G+V S + I+ A+ EIASGNLDLS+RTEAQAGS+EET +A Sbjct: 241 VGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASA 300 Query: 299 MGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIVGIISVI 358 M QLTATV+QNADNAHQA+ LA+SAS++AS+ G VV EVV TMDAI++SSLKIV IISVI Sbjct: 301 MEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVI 360 Query: 359 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELIDDSVHKV 418 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAREIKELIDDSV KV Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKV 420 Query: 419 GTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDDATQQNA 478 +GS LV +AGN+ME+VV SV+RV+DIV +IS AS EQS GI Q++QAIG MD TQQNA Sbjct: 421 QSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNA 480 Query: 479 ALVEQAAAASQSLQEQAAHLVEAVGVFRLNR 509 ALVE+AAAASQSL+EQA L +AV VFRL R Sbjct: 481 ALVEEAAAASQSLREQAKGLAQAVSVFRLER 511 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 451 bits (1159), Expect = e-128, Method: Compositional matrix adjust. Identities = 260/524 (49%), Positives = 359/524 (68%), Gaps = 15/524 (2%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 ++I +LY+LI AVI+ L ++ + +R AS++++N VPS+L+L + + + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 61 RLNVARYF--IEPTTREKIFPILEVLHEKTQAAFLKYEKECISDAKDEKLLEQDRVAFAA 118 R+ RY E R I ++ + A KYE+E ++DA D++LL RV++ Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 119 YEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGR------QEM 172 ++K+ + L L GQ +E RA P +RL KA+TE + YNE++ + QE Sbjct: 123 FDKSLAEALKLANAGQWNE-ARALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 173 DNAASILQSSIVITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLTSKID 232 AA + +I+I+A+V A+V LL+ R I SL A +A+ I+ DLT +ID Sbjct: 182 MAAARL--HAILISAAVI----AVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREID 235 Query: 233 HAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSL 292 ++ DEIGHL+ A+ +MN +L I+ +V +T+ A+ +IA+GN+DLS+RTE QA SL Sbjct: 236 TSSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSL 295 Query: 293 EETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIV 352 E+T A +LT+TV+QNA+NA QA++LA++AS IA++ G+VV +VV TM+ I +SSL I Sbjct: 296 EQTAAATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIA 355 Query: 353 GIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELID 412 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIK+LID Sbjct: 356 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLID 415 Query: 413 DSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDD 472 DSV KV GS LV AGN+M++VV SVRRVTD+V EIS+AS EQS GIEQ++QAI MD Sbjct: 416 DSVSKVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQ 475 Query: 473 ATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLNRQAQWIAE 516 +TQ+NAALVE+A AA+QSLQEQA L AV VF+L ++A I E Sbjct: 476 STQENAALVEEATAAAQSLQEQARQLERAVNVFKLRQEAMDILE 519 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 251/523 (47%), Positives = 338/523 (64%), Gaps = 15/523 (2%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 + I +L + A+++ + + AL +++ + DA T+ ++ A++ AI Sbjct: 4 LKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTR---IALKKERDAVQWHAAI 60 Query: 61 RLNVARYFIEPTTREKIFPILEVLHEKTQAAFL-KYEKEC---ISDAKDEKLLEQDRVAF 116 + N R F + + F Q+A + + +KE I+DA++++L ++ Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 117 AAYEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAA 176 AAY R + G + + + LV + + + + +Q+ +D A Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQV----IDQTA 176 Query: 177 SILQSSIVITASVSLLIGAL--VAGASL--LLVRLIVSSLRHATHVADAISRYDLTSKID 232 + + S+ L +GA+ V GA+L LL R I L A +A+ ++ DLTS+ID Sbjct: 177 AAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRID 236 Query: 233 HAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSL 292 ++ DE G L+ ALK MN +L I+G V T TI A+ EIA+GNLDLS+RTEAQAGSL Sbjct: 237 SSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSL 296 Query: 293 EETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIV 352 EET +AM QLT+TV+QNADNA QANELAASAS +A+Q G VV++VV TM AIHASS KI Sbjct: 297 EETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIA 356 Query: 353 GIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELID 412 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA+EIK+LID Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 416 Query: 413 DSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDD 472 DSV KV GS LVA AG++M++VV SV RVT +V EI+ AS EQS GIEQ++ AI +D+ Sbjct: 417 DSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDE 476 Query: 473 ATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLNRQAQWIA 515 TQQNAALVEQAAAA++S+Q+QAA L +AV VFRL AQ +A Sbjct: 477 TTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQVLA 519 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/511 (47%), Positives = 321/511 (62%), Gaps = 10/511 (1%) Query: 3 IAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAIRL 62 IA KL L + V+L L SI Q H+V+ AA+ N +PSI +L+ ++ +R Sbjct: 9 IATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVALSRVRA 68 Query: 63 NVARYFIEPTTREKIFPILEVLHEKTQA---AFLKYEKECISDAKDEKLLEQDRVAFAAY 119 N A+ + ++ ++ ++++ +A A +Y + IS+ ++ L + Sbjct: 69 NQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQ-ISEPGEKALFPGVNARIDKF 127 Query: 120 EKARHQTLALVGTGQPSELQRAREELLVPAGNR---LMKALTEHKQYNEQLGRQEMDNAA 176 TLA V G+ L A+ LL PA L+ L + Q N Q +A Sbjct: 128 IALHGDTLAAVRAGK---LDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQSTRSAE 184 Query: 177 SILQSSIVITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLTSKIDHAAH 236 + + V ++ + +L + R+I + LR A A I+ DLT+ I + Sbjct: 185 TTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADITARSD 244 Query: 237 DEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSLEETV 296 DE G L AL MN SL +I+ V T I A+G+I+SGNLDLSSRTE QA SLEET Sbjct: 245 DETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEETA 304 Query: 297 TAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIVGIIS 356 +AM +LT+TVRQNA+NA QAN+LA SAS IA + G VV++V+ TM +I ASS KIV IIS Sbjct: 305 SAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDIIS 364 Query: 357 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELIDDSVH 416 VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIK LID+SV Sbjct: 365 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQ 424 Query: 417 KVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDDATQQ 476 +VG GS LV +AG ++ +VV SV+RVTD++ EIS+AS EQ+ GIEQ++QAI MD+ TQQ Sbjct: 425 QVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQ 484 Query: 477 NAALVEQAAAASQSLQEQAAHLVEAVGVFRL 507 NAALVE+AA+ASQSL QA L E VGVFRL Sbjct: 485 NAALVEEAASASQSLSHQAQRLSELVGVFRL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,196,042 Number of extensions: 38773 Number of successful extensions: 442 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 69 Length of query: 539 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 449 Effective length of database: 1,193,720 Effective search space: 535980280 Effective search space used: 535980280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)