BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2882.p (857 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit... 1678 0.0 gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine nucleoti... 200 3e-52 >gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit [Herbaspirillum seropedicae SmR1] Length = 857 Score = 1678 bits (4345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 819/857 (95%), Positives = 841/857 (98%) Query: 1 MKIIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFAGKSAEDLSLV 60 MKIIVIGHGMVGHKFLECLAESGAGDL VTILCEEPRPAYDRVHLSEFFAGK+AEDLSLV Sbjct: 1 MKIIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAGKTAEDLSLV 60 Query: 61 APGFFDAGQSPVQFDLKLNAKAQEIDLEHKQVRVNLSGVEQILSYDKLVLATGSYPFVPT 120 APGFFD G+S VQFDLKLNAKAQ+IDLE KQV VN++GVE+ +SYDKLVLATGSYPFVPT Sbjct: 61 APGFFDRGRSAVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFVPT 120 Query: 121 VAGNQRKDCFVYRTIEDLEAMLECGNRSKSGVVIGGGLLGLECAKALRDLKLETHVVEFA 180 VAGNQRKDCFVYRTIEDLEAMLECG+RSK GVVIGGGLLGLECAKALRDLKLETHVVEFA Sbjct: 121 VAGNQRKDCFVYRTIEDLEAMLECGSRSKIGVVIGGGLLGLECAKALRDLKLETHVVEFA 180 Query: 181 PRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTVEIVDGKQHTHRMNFEDGSHLETDMIV 240 PRLMAVQVD+SGGR+LRQKIEELGVTAHTQKNTVEIVDGK HTHRMNFEDGSHLETDMIV Sbjct: 181 PRLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHTHRMNFEDGSHLETDMIV 240 Query: 241 FSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECALWNGKIFGLVAPGYD 300 FSAGIRPRDELAR AGLKVG+RGGI IDN CLTSD AVYAIGECALWNGKIFGLVAPGYD Sbjct: 241 FSAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECALWNGKIFGLVAPGYD 300 Query: 301 MARTAAKHLLSHRDDAIEVPQFNGADMSTKLKLMGVDVASIGDAHGKQAGSRSYQFTDER 360 MARTAAKHLLSHRD+AIEVP FNGADMSTKLKLMGVDVASIGDAHGK+AGSRSYQFTDER Sbjct: 301 MARTAAKHLLSHRDEAIEVPAFNGADMSTKLKLMGVDVASIGDAHGKEAGSRSYQFTDER 360 Query: 361 KQIYKKIVVSESGKHLLGAVMVGDAAEYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG 420 KQIYKKIVVSESGKHLLGAVMVGDA+EYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG Sbjct: 361 KQIYKKIVVSESGKHLLGAVMVGDASEYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG 420 Query: 421 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIGDLKACTKAGTACGGCVPLVTQVMKA 480 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIG+LKACTKAGTACGGCVPLVTQVMKA Sbjct: 421 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIGELKACTKAGTACGGCVPLVTQVMKA 480 Query: 481 EMKKQGMAVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELLAKHGKGLGCDICKPMVANVL 540 EMKKQG+AVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELL+KHGKGLGCD+CKPMVANVL Sbjct: 481 EMKKQGLAVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELLSKHGKGLGCDVCKPMVANVL 540 Query: 541 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG 600 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG Sbjct: 541 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG 600 Query: 601 LYTKITGGQRVDLFGARVDQLPDIWEALIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG 660 LYTKITGGQRVDLFGARVDQLPDIWE LIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG Sbjct: 601 LYTKITGGQRVDLFGARVDQLPDIWEELIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG 660 Query: 661 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIATDKGWNLYVCGNGGM 720 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIAT+KGWNLYVCGNGGM Sbjct: 661 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGM 720 Query: 721 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGLAYLKSVVIDDK 780 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGL YLKSVV+DDK Sbjct: 721 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGLDYLKSVVLDDK 780 Query: 781 LGIAAELETEMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNIQFVEERGQIRPA 840 LGIAAELE EMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNI+FVEERGQIRPA Sbjct: 781 LGIAAELEAEMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNIKFVEERGQIRPA 840 Query: 841 TVAEKKLLEIPVVVETV 857 TVAEKKLL+IPVVVETV Sbjct: 841 TVAEKKLLDIPVVVETV 857 >gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 413 Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 139/398 (34%), Positives = 211/398 (53%), Gaps = 28/398 (7%) Query: 3 IIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFAG-KSAEDLSLVA 61 ++V+G+GM G + +E L + +T+ EP Y+R+ LS AG KS +D+ L Sbjct: 14 LVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIMLNP 73 Query: 62 PGFFDAGQSPVQFDLKLNAKAQEIDLEHKQVRVNL-SGVEQILSYDKLVLATGSYPFVPT 120 ++D + L+A + ++ +Q V+ SG+ + YD+L+LATGS PF+ Sbjct: 74 RAWYDDN------GITLHAGDPVVHIDRRQRTVHAKSGLT--VQYDRLLLATGSTPFIIP 125 Query: 121 VAGNQRKDCFVYRTIEDLEAMLECGNRSKSGVVIGGGLLGLECAKALRDLKLETHVVEFA 180 V G+Q +R I+D++AML+ + VVIGGGLLGLE A L ++ VV Sbjct: 126 VPGHQLPGVIAFRDIQDVDAMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVT 185 Query: 181 PRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTVEIVDGKQHTHRMNFEDGSHLETDMIV 240 LM Q+D +L++ +E+ G+ +T EIV G + F+DGS + D++V Sbjct: 186 DALMNQQLDKPAAALLKKALEDKGLRFLLNAHTEEIV-GPDRVTAVRFKDGSSIPADLVV 244 Query: 241 FSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECALWNGKIFGLVAPGYD 300 +AG+RP LA+ AGL ER I++D+ T D VYA+GEC FGLVAP +D Sbjct: 245 MTAGVRPNIALAKAAGLHC-ER-AIIVDDTLQTYDPRVYAVGECVQHRKATFGLVAPIWD 302 Query: 301 MARTAAKHL--LSHRDDAIEVPQFNGADMSTKLKLMGVDVASIGDAHGKQAGSRSYQFTD 358 AR HL HR ++ +TKLK+ GVD+ S GD G + D Sbjct: 303 QARVCGAHLAGAGHR-------RYVQQATATKLKVTGVDLYSAGDFIGGD-DTEDLIVRD 354 Query: 359 ERKQIYKKIVVSESGKHLLGAVMVGDAAE---YGTLLQ 393 R+ +YK++V+ G L+GAV+ GD + Y L+Q Sbjct: 355 PRRGVYKRLVL--RGTRLVGAVLYGDVKDGPWYFDLIQ 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,702,839 Number of extensions: 115719 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 2 Length of query: 857 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 764 Effective length of database: 1,179,515 Effective search space: 901149460 Effective search space used: 901149460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)