BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2880.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...    72   8e-14

>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 47/219 (21%)

Query: 91  GRLPAVVIMHSSAG-------------------------VSAAEEDWSNFFNEMGLATLV 125
           G  PAVV++H  AG                         +S   + W+ ++ E G   L+
Sbjct: 95  GPHPAVVMLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLALL 154

Query: 126 VDSFTPR--------HIQRSVEDQNVLNVAASAMDALKALELLATHPAIDPARIAVIGFS 177
           VDS+ PR        H   + E   V  +    +DA  AL  LA    ++PARI + G+S
Sbjct: 155 VDSYGPRGVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGWS 214

Query: 178 RGGGAGLHASFERVRQAAIADDT--RFAIHLLFYPSCSEFARTTGA-----PLHLFMGSE 230
            G    L+      RQA+    T   FA  ++FYP C   A  + +     P+ + +G+ 
Sbjct: 215 NGASTALNV---MQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAA 271

Query: 231 DAYNSVEKCRFNVEQ---LRRVGAKVELTVYDGAKHGFD 266
           D   S ++C   + Q   +RR  + V +T+Y GA H FD
Sbjct: 272 DQEVSPQRCLRVLRQAIPMRRNSSPV-VTLYPGATHDFD 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,359
Number of extensions: 44478
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)