BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2878.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894...   291   2e-80
gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner m...    79   2e-16
gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase [Herbaspi...    61   5e-11

>gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  291 bits (744), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/163 (85%), Positives = 157/163 (96%)

Query: 1   MTDYLDIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNFALDAAD 60
           MTDYL+IF+RLL AMLIGCAIGIDRNLRGKPTG+KTLGLV LGSALVT+AAMNFAL A D
Sbjct: 15  MTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAED 74

Query: 61  HSRDAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRV 120
           H+RDA+SRAIQGVITGIGFLGAGVI+HEQ +EKVRGLTTAASIWVTAAVGIVCGAGWW+V
Sbjct: 75  HNRDAVSRAIQGVITGIGFLGAGVIIHEQWTEKVRGLTTAASIWVTAAVGIVCGAGWWQV 134

Query: 121 ALMASGLIVVLFMVGRPLEHFLHRQWLRKTEDERADISAREED 163
           ALMA+GLI++LF++GRPLE FLHRQW+RK++DERADISAREED
Sbjct: 135 ALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 177


>gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 6/143 (4%)

Query: 1   MTDYLDIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTL-AAMNFA-LDA 58
           M    ++  RL ++ ++G  IGI+R       G++T  LV +GS L+ L +A  FA +  
Sbjct: 1   MISATEVILRLTVSAVLGSLIGIERERLSWAAGLRTHMLVSVGSTLIMLVSAYGFANILQ 60

Query: 59  ADHSRDAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWW 118
           +D      SR    V++GIGFLGAG I+   R E +RGLTTAAS+W  AA+G+  G G +
Sbjct: 61  SDKVVLDPSRMAAQVVSGIGFLGAGSIL--LRGEIIRGLTTAASLWTVAAIGLAVGGGMY 118

Query: 119 RVALMASGLIVVLFMVG-RPLEH 140
            VA +A   IV+L + G +PLE 
Sbjct: 119 -VAAVAGTFIVLLILAGMKPLER 140


>gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 6   DIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNFALDAADHSRDA 65
           D F  L  A ++G  IG++R  R +  G++T  LV LG+A+    A   A        + 
Sbjct: 14  DTFISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRLA------GHEG 67

Query: 66  ISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALMAS 125
               +  V++G+GFLGAGVI+ E+ +  VRG+ TAA++W +AAVG   GA     A++A+
Sbjct: 68  AVHVVAYVVSGVGFLGAGVIMREEGN--VRGINTAATLWGSAAVGAAAGADLILEAILAT 125

Query: 126 GLIVVLFMVGRPLEHFLHRQWL 147
             ++    + RP+ + ++R+ L
Sbjct: 126 IFVLAANTLLRPVVNTINRKPL 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 463,317
Number of extensions: 17494
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)