BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2876.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312199|ref|YP_003776291.1| phospholipid-binding protein [H...   311   3e-86
gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409...    82   4e-17

>gi|300312199|ref|YP_003776291.1| phospholipid-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  311 bits (796), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 166/192 (86%), Gaps = 2/192 (1%)

Query: 1   MSFPRHIVTTLALTFSALS--AQAAEFTLASSDIQEGQSLSISEVFNGFGCMGLNRSPQL 58
           M+  R  +   ALTFSAL+  AQAAEFTL SSDI EGQSLSI++VFNGFGC+GLN+SPQL
Sbjct: 1   MTLIRPTLAAAALTFSALTLPAQAAEFTLTSSDIAEGQSLSIAQVFNGFGCIGLNKSPQL 60

Query: 59  SWSGAPDGTKSFAVTVYDPDAPTGSGWWHWTVFNLPASVRSLPGGINAQGQGLPAGAIQG 118
           SWSGAP  TKSFA+TVYDPDAPTGSGWWHWTVFN+PASVRSLP G  A G+GLPAG+IQG
Sbjct: 61  SWSGAPADTKSFAITVYDPDAPTGSGWWHWTVFNIPASVRSLPAGATAPGKGLPAGSIQG 120

Query: 119 RTDFGSSGFGGACPPEGDKPHRYQFIVWALKTEKLPLDAQASGAMLGFLLNASALGQAKL 178
           RTDFGSSGFGGACPPEGDKPHRYQF+VWALKTE LPLDAQASGAMLGF LNA AL  AKL
Sbjct: 121 RTDFGSSGFGGACPPEGDKPHRYQFVVWALKTETLPLDAQASGAMLGFYLNAQALATAKL 180

Query: 179 TAYYGREKNHAK 190
           TA Y R+K + K
Sbjct: 181 TAVYERQKPNVK 192


>gi|300309750|ref|YP_003773842.1| hypothetical protein Hsero_0409
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score = 81.6 bits (200), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 42/177 (23%)

Query: 53  NRSPQLSWSGAPDGTKSFAVTVYDPDAPTGS-----------------GWWHWTVFNLPA 95
           NR+P  +WS  P GTKS A+ V+DPD P+                    ++HWT+ ++PA
Sbjct: 34  NRNPHFAWSELPAGTKSLALVVHDPDVPSRGDDVNQEGKTVPLELPRVDFYHWTLVDIPA 93

Query: 96  SVRSLP-----GGINAQGQGLPA-------GAIQGRTDF------------GSSGFGGAC 131
           SV  +       G+ A+G+  PA       GA QG  D+               G+ G C
Sbjct: 94  SVTEIKAGQFSNGVTARGKPGPAVLGEVMPGARQGINDYTGWFAGDGDMRGDYFGYDGPC 153

Query: 132 PPEGDK-PHRYQFIVWALKTEKLPLDAQASGAMLGFLLNASALGQAKLTAYYGREKN 187
           PP  D   HRY F ++AL  E+LP+     G+++   L    L QA +T  Y    N
Sbjct: 154 PPWNDALVHRYIFTLYALDVEQLPVAGNLEGSVVVTALRDHVLEQASITGLYTLNPN 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 671,516
Number of extensions: 31942
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)