BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2871.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312195|ref|YP_003776287.1| ABC transporter auxiliary compo...   265   2e-72

>gi|300312195|ref|YP_003776287.1| ABC transporter auxiliary
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  265 bits (676), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 158/200 (79%), Gaps = 2/200 (1%)

Query: 9   LLRTALLASSLALTACSILPKADPLAVYRLPTPATT--SAAVAAAGSAYRSLRIVAPTAN 66
           LLRT+L+A+SL L ACSILPK DP AVYRLPT       A+  A     R+LRI  P AN
Sbjct: 5   LLRTSLVAASLMLAACSILPKPDPQAVYRLPTATAMPAQASTTAGDIRLRALRIATPYAN 64

Query: 67  RSIDSERILVLPEGDVVKSYAGVRWSDPAPQLLRDRLLDAFQADGRFPRLSGDNANIAAE 126
           RSIDSERILVLPEGDV+KSYAGVRWSD AP L RDRLL+AF+ADGR+ RLS D  NIAA+
Sbjct: 65  RSIDSERILVLPEGDVIKSYAGVRWSDAAPLLWRDRLLEAFRADGRYQRLSSDTGNIAAD 124

Query: 127 VELNGALNAFQTEYRQGVPTVVIIYEARLVDTISRQQLAARRFVVVQPVAGSQVPEVVTA 186
           +EL+GAL+AFQTEYR GVPTVVI+Y+ARL+DT +RQQLA++RF + + V GS+VPEVV+A
Sbjct: 125 IELDGALSAFQTEYRHGVPTVVIVYDARLIDTANRQQLASQRFAIQRAVDGSKVPEVVSA 184

Query: 187 FGSASQRLANEVVAWVATVR 206
           FG A  +LA EVV W A  R
Sbjct: 185 FGQACDQLAKEVVNWAAAQR 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 546,139
Number of extensions: 21033
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)