BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2869.p (282 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 436 e-124 gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 171 7e-44 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 161 7e-41 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 145 3e-36 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 141 7e-35 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 436 bits (1122), Expect = e-124, Method: Compositional matrix adjust. Identities = 233/262 (88%), Positives = 244/262 (93%), Gaps = 1/262 (0%) Query: 1 MVNANATNHTNHTDSTVDNIIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKS 60 MV T D VD II+VRGLRNQFG QVVH+QL LQVRRGEILGVVGGSGTGKS Sbjct: 1 MVRPQHAPATRGGDG-VDPIIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKS 59 Query: 61 VLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIAL 120 VLLRSIVGL RPAAG+V+VFGQDL+ALSSE RS YERRFGVLFQQGALFSSLTVLENIAL Sbjct: 60 VLLRSIVGLLRPAAGEVRVFGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIAL 119 Query: 121 PLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILF 180 PLTEYGGLNA+EARGV+AMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILF Sbjct: 120 PLTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILF 179 Query: 181 LDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVAD 240 LDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDR+AVLS++RVLVAD Sbjct: 180 LDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVAD 239 Query: 241 RIEAVAAYDDAWIQQYFQGPRG 262 RIEAVAAYDDAWI+QYFQGPRG Sbjct: 240 RIEAVAAYDDAWIRQYFQGPRG 261 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 171 bits (433), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 1/214 (0%) Query: 45 RGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYERRFGVLFQ 104 RG+++ V+GGSG+GK+ +LR I G RP G+V+V G+++ L+++ R+ G+LFQ Sbjct: 5 RGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMGMLFQ 64 Query: 105 QGALFSSLTVLENIALPLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAALSGGMIK 164 GALF+ +TV +N+A PL E+ L+ R + MKL GL AA K PA +SGGM + Sbjct: 65 NGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLK-PAEISGGMAR 123 Query: 165 RAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAI 224 R ALARA+ALDP ++ DEP AGLDPIS LI L DALG T LV+HD++ +AI Sbjct: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAI 183 Query: 225 CDRVAVLSAKRVLVADRIEAVAAYDDAWIQQYFQ 258 D V LSA +++ E + + D +++Q+ Sbjct: 184 ADHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVH 217 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 161 bits (407), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 20 IIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKV 79 +I+++ + +FG ++ L +R+GEI G++G SG GKS L+R++ L RP +G++ + Sbjct: 1 MIEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 Query: 80 FGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAM 139 GQDL++LS+ R G++FQ L SS +V +NIALPL G AE A V + Sbjct: 61 DGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPL 120 Query: 140 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 199 L L GL A D+YPA +SGG +R +ARALA DP +L DE T+ LDP + + L Sbjct: 121 -LELVGLT-ALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILEL 178 Query: 200 ILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVL 237 + + LGLT+ L+TH ++ + ICDRVAV+ A +V+ Sbjct: 179 LRKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVI 216 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 119/193 (61%), Gaps = 1/193 (0%) Query: 39 LALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYERR 98 + L + +GE+ G++G SG GKS L+R++ L+RP +G+V + G+D++ L E +R Sbjct: 24 INLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEALLGLRQR 83 Query: 99 FGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAAL 158 G++FQ L ++ TV +NI PL G + EE L L GL A D+YP+ L Sbjct: 84 VGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQLVGLD-AHRDQYPSQL 142 Query: 159 SGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDL 218 SGG +R +ARALA P +L DE T+ LDP + + RL+L + LGLT+ L+TH++ Sbjct: 143 SGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEINRKLGLTIVLITHEM 202 Query: 219 DTLYAICDRVAVL 231 + + +ICDRVAVL Sbjct: 203 EVIRSICDRVAVL 215 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 141 bits (355), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 131/242 (54%), Gaps = 18/242 (7%) Query: 41 LQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYERRFG 100 L++ G I G++G SG GKS LLR+I L+RP +G+V+V DL+ L RR G Sbjct: 63 LEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVALRRRIG 122 Query: 101 VLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAALSG 160 ++FQ L ++ TV +NIALPL G A+ + V + LAL GL A D YP LSG Sbjct: 123 MIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHEL-LALVGLQDKA-DSYPRRLSG 180 Query: 161 GMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDT 220 G +R +ARALA P+IL DE T+ LDP + + +L+ + LG+T+ L+TH++ Sbjct: 181 GQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITHEMSV 240 Query: 221 LYAICDRVAVLSAKRVLVADRIEAVAAYDDAWIQQYFQGPRGRAASMAALRAAASTTQQG 280 + I DRV VL R VA + W Q F P+ AA RA + Q G Sbjct: 241 IREIADRVLVLEQGR---------VAELGEVW--QVFGKPQ-----HAATRALLAPLQHG 284 Query: 281 KP 282 P Sbjct: 285 LP 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,984 Number of extensions: 26267 Number of successful extensions: 461 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 146 Length of query: 282 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 198 Effective length of database: 1,222,130 Effective search space: 241981740 Effective search space used: 241981740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)