BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2868.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...   630   0.0  
gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...    79   8e-16

>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  630 bits (1624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/362 (87%), Positives = 334/362 (92%)

Query: 1   VLHVEGDWTLSNFRSLSRQIAQQRPAIGDDLVLTFSALSAFDTVGAKLLVDLLGVPMALR 60
           VLHVEGDWTL N+R+LSRQIAQ RPA+G+  VL FSALSAFDTVGAKLLVDLLGVP ALR
Sbjct: 19  VLHVEGDWTLRNYRALSRQIAQARPALGEQTVLEFSALSAFDTVGAKLLVDLLGVPAALR 78

Query: 61  QTGEDSNLPRAWRGLLATVADAKAIAMPKAAAPRQAWITDMLERAGIATLNLRGCTRDLL 120
           QT  DS L  AWR LLA VA+AKAIAMPK A PRQAWITDMLER G ATL+LR C   LL
Sbjct: 79  QTQADSTLAPAWRALLAVVAEAKAIAMPKPAPPRQAWITDMLERVGAATLSLRACALGLL 138

Query: 121 GFTGLCLQTLASSFWRPSRWRFTAVVAQVEQTGLDAVPIVSLLTFMVGAVVAFLGATVLA 180
           GF GLCLQTL SSFWRPSRWR TAVVAQ+EQTGLDAVPIVSLLTFMVGAVVAFLGATVLA
Sbjct: 139 GFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTFMVGAVVAFLGATVLA 198

Query: 181 DFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGLDP 240
           +FGAS+YTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGLDP
Sbjct: 199 NFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGLDP 258

Query: 241 VNLLVLPRLLALLVSMPLLTFIGMMSGLLGGAMVCALSLDISPTMFLSLVQQDVGIRHFV 300
           + LLVLPRL+ALLV+MP LTFI M+SGL GGAMVCALSLDISPTMFLSL+QQDVGIRHF+
Sbjct: 259 IKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTMFLSLLQQDVGIRHFI 318

Query: 301 LGMVKAPLFAFVIALIGCNEGFKVSGSAQSVGEHTTSSVVQSIFVVILLDALAALFFMEM 360
           LGMVKAPLFAFV+A+IGCNEGFKVSGSAQSVG+HTTSSVVQSIFVVILLDALAALFFMEM
Sbjct: 319 LGMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFVVILLDALAALFFMEM 378

Query: 361 GW 362
           GW
Sbjct: 379 GW 380


>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 120 LGFTGLCLQT-LASSFWRPSRWRFTAVVAQVEQTGLDAVPIVSLLTFMVGAVVAFLGATV 178
           +GF G    + L SS     R R   +  Q+   G  ++ I+++    VG V+   G   
Sbjct: 20  VGFAGRMFASMLGSSLGLLRRPRL--ITDQIHFIGNYSLVIIAVSGLFVGFVLGLQGYYT 77

Query: 179 LADFGASLYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEIDAIRALGL 238
           L  +G+      LVA S  RE   ++TA+L AGR  +S TA+IG MKA E++ A+  + +
Sbjct: 78  LNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEMMAV 137

Query: 239 DPVNLLVLPRLLALLVSMPLLTFIGMMSGLLGGAMVCALSLDISPTMFLSLVQQDVGI-R 297
           +P+  +V PR  A +++MP+L  I    G++GG +V  L + +    F S +Q  V +  
Sbjct: 138 NPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGVDEGAFWSQMQGGVDVWN 197

Query: 298 HFVLGMVKAPLFAFVIALIGCNEGFKVSGSAQSVGEHTTSSVV 340
               G++K+ +F   +  +   +G++   + + V   TT +VV
Sbjct: 198 DIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,878
Number of extensions: 33914
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)