BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2865.p
         (721 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312826|ref|YP_003776918.1| primary-amine oxidase [Herbaspi...  1410   0.0  

>gi|300312826|ref|YP_003776918.1| primary-amine oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score = 1410 bits (3650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/721 (94%), Positives = 698/721 (96%)

Query: 1   MLPLKKTMEDFGATVRWGDYAGLWTITRNSVTVRVKPQAKTALVNGQSVALPVPLVMKGG 60
           MLPLKKTMEDFGATVRW  YAGLWTI RNSVTVRVKP+A TALVNGQSV LPVPLVMKGG
Sbjct: 55  MLPLKKTMEDFGATVRWDAYAGLWTIQRNSVTVRVKPRATTALVNGQSVKLPVPLVMKGG 114

Query: 61  QPYVSDEFINTVFAPSLDKTFQIEAVPHPLNPLSADEINETVAVLKASGHFQPNYRFTEI 120
           QPYVSDEFINTVFAPSLDKTFQIEAVPHPLNPLSADEIN  + VLKASG +QPNYRFTEI
Sbjct: 115 QPYVSDEFINTVFAPSLDKTFQIEAVPHPLNPLSADEINAALEVLKASGRWQPNYRFTEI 174

Query: 121 TLAEPPKEQVWKFALGDRKQVFERRADFTVLDGSKVIEGTVDLKRRTVERWEPKAGVHGM 180
           TLAEPPKEQVWKFALG+R Q   RRADFT+LDGSKVIEGTVDL +R V RWEPK GVHGM
Sbjct: 175 TLAEPPKEQVWKFALGERGQTIARRADFTLLDGSKVIEGTVDLGQRNVTRWEPKEGVHGM 234

Query: 181 VLVDDFATVQNAMEASPEYAQALAKRGITDIKKVVATPLTVGYFGGKDALQEDSRLLKVV 240
           VLVDDFATVQNAME+SPEYAQALAKRGITDIKKVVATPLTVGYFGGKDALQED+RLLKVV
Sbjct: 235 VLVDDFATVQNAMESSPEYAQALAKRGITDIKKVVATPLTVGYFGGKDALQEDARLLKVV 294

Query: 241 SYLDVGDGNYWAHPIENLVAVVDLVQKKVIKIEDHGVIPVPMKPTGYDGSGRALVPPPKP 300
           SYLDVGDGNYWAHPIENLVAVVDLVQKKVIKIED+GVIPVPMKPTGYDGSGRALVPPPKP
Sbjct: 295 SYLDVGDGNYWAHPIENLVAVVDLVQKKVIKIEDNGVIPVPMKPTGYDGSGRALVPPPKP 354

Query: 301 LDISEPEGKNYTITGNTLRWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGM 360
           LDISEPEGKNYTITGNTLRWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGM
Sbjct: 355 LDISEPEGKNYTITGNTLRWRNWEMHFKLDSRVGLMFSTVTYNDHGKKRQIMYEGSLGGM 414

Query: 361 IVPYGDPDVGWYFKAYLDSGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPR 420
           IVPYGDPDVGWYFKAYLDSGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPR
Sbjct: 415 IVPYGDPDVGWYFKAYLDSGEYGMGTLTSPIERGKDAPDNVVLLDATLADTSGKPRTIPR 474

Query: 421 AIGVFERYADPEFKHQEYGQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIGLNAG 480
           AIGVFERYA PEFKHQEYGQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIG+NAG
Sbjct: 475 AIGVFERYAGPEFKHQEYGQPNLSVERRELVIRWISTVGNYDYIFDWVFAENGTIGINAG 534

Query: 481 ATGIEAVKGVKSSTMRDASAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLDIDGENNSLIE 540
           ATGIEAVKGVKSSTMRDASAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLD+DG+NNSL E
Sbjct: 535 ATGIEAVKGVKSSTMRDASAAEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGQNNSLTE 594

Query: 541 VDPVVLPNTRGGPRNSTMQTVQRTPDTEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQL 600
           VDPVVLPNT GGPR+STMQTVQRT +TEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQL
Sbjct: 595 VDPVVLPNTPGGPRSSTMQTVQRTAETEQQAAQKFDASTIRLLSNPNKFNKVGNPVSYQL 654

Query: 601 IPYAGGTHPIAKGANFSQDEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLG 660
           IPYAGGTHPIAKGANFS DEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLG
Sbjct: 655 IPYAGGTHPIAKGANFSPDEWLNKRLSFMDRQLWVTRYDPQQRFPEGKYPNRSHEDTGLG 714

Query: 661 AFIKDNQSIVNHDDVVWLTTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKK 720
           AF+KDNQSIVN DDVVWLTTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKK
Sbjct: 715 AFVKDNQSIVNQDDVVWLTTGTTHVARAEEWPIMPTEWVHVLLKPWNFFDETPTLGLNKK 774

Query: 721 K 721
           K
Sbjct: 775 K 775


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,507,289
Number of extensions: 114088
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 629
Effective length of database: 1,184,250
Effective search space: 744893250
Effective search space used: 744893250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)