BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2862.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   519   e-148
gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   334   6e-93

>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  519 bits (1337), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/294 (87%), Positives = 273/294 (92%)

Query: 38  RADAHALHNMMLGTARAGSRIVAVGAYGYIILSDDGGASYRQAEQVPVDTTLTSVSFVDD 97
           R DAHALHNMMLG ARAGSRIVAVGAYGYIILSDDGGASYRQA+QVPVDTTLTSVSF D 
Sbjct: 38  RTDAHALHNMMLGAARAGSRIVAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADA 97

Query: 98  KQGWAAGHGGVILHTVDGGKTWQLQRSDTKVDQPLFSIWFANASEGWAAGLWSLLLHTRD 157
            QGWAAGHGGVILHT DGGKTW LQRSDT VDQPLFSIWFANA+EGWAAGLWSLLLHT+D
Sbjct: 98  SQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQD 157

Query: 158 GGKSWQQVKLPTAPGQQRGDLNLLHLFPGQNGALYVAAEQGVLYRSTDGGQQWSALSTGS 217
           GGKSWQQVKLP APGQQR DLNLLH+FPG++GAL+VAAEQGVLYRS DGGQ W AL+TG+
Sbjct: 158 GGKSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGT 217

Query: 218 KASLWSGVVTASGVIVVGGLGGKLLRSDDGGQHWQAIDSPTSGSITALRSQGNEVVASSL 277
           KASLWSGV TASG IVVGGLGGKLLRSDDGGQHWQ I SPTSGSITALRS+GN+V+ASSL
Sbjct: 218 KASLWSGVSTASGAIVVGGLGGKLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSL 277

Query: 278 SGALLVSEDEGRHWRIKASARDALTTLELQDGRAERPLAYGKGGQAKLEAKASQ 331
           SGALL S+D+GR WRIKA+ARDALTTLELQ+GRAERPLAYGKGGQAKLE  AS+
Sbjct: 278 SGALLASDDDGRQWRIKATARDALTTLELQEGRAERPLAYGKGGQAKLEVSASR 331


>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  334 bits (856), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 176/307 (57%), Positives = 213/307 (69%), Gaps = 3/307 (0%)

Query: 19  GTTALALAQADAPLILSPARADAHALHNMMLGTARAGSRIVAVGAYGYIILSDDGGASYR 78
           G + LA AQ   P+ +  A AD  A   MML  A AG R+VAVGA G +ILSDDGG  +R
Sbjct: 14  GCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARGEVILSDDGGRQWR 73

Query: 79  QAEQVPVDTTLTSVSFVDDKQGWAAGHGGVILHTVDGGKTWQLQRSDTKVDQPLFSIWFA 138
           QA QVPVD TLT+VSFVDDK+GWA GHGGV++HT DGG+TWQLQRS T VDQPLF+++F 
Sbjct: 74  QARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSATDVDQPLFTVYFR 133

Query: 139 NASEGWAAGLWSLLLHTRDGGKSWQQVKLPTAPGQQRGDLNLLHLFPGQNGALYVAAEQG 198
           +   GWAAGLWSLLL T DGGK+W  + LP A G +R DLNLL  FPG    LY+AAEQG
Sbjct: 134 DREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQG 193

Query: 199 VLYRSTDGGQQWSALSTGSKASLWSGVVT-ASGVIVVGGLGGKLLRSDDGGQHWQAIDSP 257
            L+RSTD GQ W  L+TGSKASLWSG V   +G ++V GLGGKLLRS DGG  WQ +  P
Sbjct: 194 TLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALP 253

Query: 258 TSGSITALRSQGNEVVASSLSGALLVSEDEGRHWRIKASARDALTTLELQDGRAERPLAY 317
           TSGSIT +++    + A+SL G +L S DEG  W++  SA   LTT+ +   R  + L +
Sbjct: 254 TSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTILVN--RLGQVLPF 311

Query: 318 GKGGQAK 324
            K G  K
Sbjct: 312 SKEGVLK 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,040,397
Number of extensions: 44669
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)