BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2861.p (789 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312823|ref|YP_003776915.1| exporter of the RND superfamily... 1536 0.0 gi|300313226|ref|YP_003777318.1| protein exporter of the Resista... 1304 0.0 >gi|300312823|ref|YP_003776915.1| exporter of the RND superfamily protein [Herbaspirillum seropedicae SmR1] Length = 789 Score = 1536 bits (3977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 746/789 (94%), Positives = 769/789 (97%) Query: 1 MPTAPSLLSLDRLEACLFRLRIPILLALLACTAVLSFFALQLRMDAGFEKQMPTHHEYID 60 M PSL SLDRLEA LFRLRIPIL LLA TAVLS+FALQLRMDAGFEKQMPTHHEYID Sbjct: 1 MAATPSLFSLDRLEASLFRLRIPILALLLAFTAVLSYFALQLRMDAGFEKQMPTHHEYID 60 Query: 61 TFKQYRDDVLGANRLNIVLRARHGSIWTKEGLTRLSEMTQAVMFLPNISRLGVQSLWTPN 120 TFKQYRDDVLGANRLNIVLRARHGSIWTKEGLTRLSEMTQAVMFLPNISRLGVQSLWTPN Sbjct: 61 TFKQYRDDVLGANRLNIVLRARHGSIWTKEGLTRLSEMTQAVMFLPNISRLGVQSLWTPN 120 Query: 121 TFVNEITEEGFRADPVIPGTVIPSALTPENIEQIRNTAVNGGFVGTLISRNQDSAMIVAE 180 TFVNEITEEGFRADPVIPGTVIPSALTPE IEQIRNTA+NGGFVGTLISRNQDSAMIVAE Sbjct: 121 TFVNEITEEGFRADPVIPGTVIPSALTPEIIEQIRNTAINGGFVGTLISRNQDSAMIVAE 180 Query: 181 INEFDAKGDKVDYLAYNKLLNDLRAKYENADFEVQIIGFAKQIGDVADGAEGVLKFCAMA 240 INEFDAKG+KVDYLAYNKLLNDLRAKYENADFEVQIIGFAKQIGDVADGAEGV+KFC MA Sbjct: 181 INEFDAKGEKVDYLAYNKLLNDLRAKYENADFEVQIIGFAKQIGDVADGAEGVVKFCIMA 240 Query: 241 LLLTTVAVYWYCRSLPFTLLPVACSLVSLVWQFGTLRLLGYGLDPLAVLVPFLVFAIGVS 300 LLLT +AVYWYCRSLPFTLLPVACSLVSLVWQFGTLRLLGYGLDPLAVLVPFLVFAIGVS Sbjct: 241 LLLTAIAVYWYCRSLPFTLLPVACSLVSLVWQFGTLRLLGYGLDPLAVLVPFLVFAIGVS 300 Query: 301 HGVQQINTIVRGIASGQSCEAAARASFKGLLIPGVLALVTALVSFITLVMIPIPMVRELA 360 HGVQQINTIVRGIASGQSCEAAARASFKGLLIPGVLALVTALVSF+TLVMIPIPMVRELA Sbjct: 301 HGVQQINTIVRGIASGQSCEAAARASFKGLLIPGVLALVTALVSFVTLVMIPIPMVRELA 360 Query: 361 ITASIGVGYKIITNLVMLPLAASLLKVGKTYAEAAMRAQQARGRWLAVLSRAAQPKVARS 420 ITASIGVGYKIITNLVMLPLAASLLKVGKTYA+AAMRAQQARGRWLAVLSR+AQP+VARS Sbjct: 361 ITASIGVGYKIITNLVMLPLAASLLKVGKTYADAAMRAQQARGRWLAVLSRSAQPRVARS 420 Query: 421 IVVLTLLVLAGSAWYSHDRLVGTLQPGAPELHANARYNQDARWIADNYGNGLDWLTVILA 480 IVV+TLLVLAGSAWYSHDRLVGTLQPGAPELHA+ARYN+DARWIADNYGNGLDWLTVILA Sbjct: 421 IVVITLLVLAGSAWYSHDRLVGTLQPGAPELHADARYNRDARWIADNYGNGLDWLTVILA 480 Query: 481 TPANSCDKVAFGRYQDQFDTVMRHVPGVLSVSSFADQMKIYNEGYNEGNPTMFTVPLDPA 540 TPANSCD+V FGRYQDQFDTVMRHVPGVLSVSSFADQMKIYNEGYNEGNP MFTVPLD Sbjct: 481 TPANSCDQVRFGRYQDQFDTVMRHVPGVLSVSSFADQMKIYNEGYNEGNPAMFTVPLDAG 540 Query: 541 NYAALAVEIGRVRGFLAKDCNMLATHLFLADHKASTINGVIQAVKTYRDQHQLAGLEIRL 600 NYAALAVEIGRVRGFL+KDCNMLA+HLFLADHKA+TINGVIQAVK YRDQH+L GLEIRL Sbjct: 541 NYAALAVEIGRVRGFLSKDCNMLASHLFLADHKAATINGVIQAVKRYRDQHKLEGLEIRL 600 Query: 601 AAGNAGVIAAVNDEVEKSELPMMLYVYGAIVLLVFVVYRDWRAIIACCLPLTVATFIGYA 660 AAGNAGVIAAVNDEVEKSELPMMLYVYGAIVLLVF VYRDWRAIIACCLPLTVATFIGYA Sbjct: 601 AAGNAGVIAAVNDEVEKSELPMMLYVYGAIVLLVFAVYRDWRAIIACCLPLTVATFIGYA 660 Query: 661 FMKQLQIGLTVATLPVMVLAVGIGVDYAFYIYNRLQLHLAAGIEIEQALHHAIQEVGIAT 720 FMKQLQIGLTVATLPVMVLAVGIGVDYAFYIYNRLQLHLAAG+ IE+ALH+AIQEVGIAT Sbjct: 661 FMKQLQIGLTVATLPVMVLAVGIGVDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIAT 720 Query: 721 IFTAITLAVGVATWSFSALKFQADMGKLLAFMFLVNLVMAMTALPAFAVVLEKMFPRKSP 780 IFTAITLA+GVATWSFS LKFQADMGKLLAFMFLVNL+MAMTALPAFAVVL+KMFPRKSP Sbjct: 721 IFTAITLAIGVATWSFSDLKFQADMGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSP 780 Query: 781 IKLNSALAH 789 IKLNSALAH Sbjct: 781 IKLNSALAH 789 >gi|300313226|ref|YP_003777318.1| protein exporter of the Resistance-Nodulation-Cell Division (RND) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 1304 bits (3375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/755 (82%), Positives = 683/755 (90%) Query: 35 LSFFALQLRMDAGFEKQMPTHHEYIDTFKQYRDDVLGANRLNIVLRARHGSIWTKEGLTR 94 ++ F+LQLRMDAGFEKQ+P+ HEY+ T QYRD++ GANRLNIVLRARHGSIWTKEGLTR Sbjct: 1 MAVFSLQLRMDAGFEKQIPSDHEYVATQHQYRDELFGANRLNIVLRARHGSIWTKEGLTR 60 Query: 95 LSEMTQAVMFLPNISRLGVQSLWTPNTFVNEITEEGFRADPVIPGTVIPSALTPENIEQI 154 L+ MTQAVMFLPN++RLGVQSLWTPNTFVNEITEEGFRADPVI GTV P +LTPE I I Sbjct: 61 LNAMTQAVMFLPNVNRLGVQSLWTPNTFVNEITEEGFRADPVIAGTVTPESLTPEVIASI 120 Query: 155 RNTAVNGGFVGTLISRNQDSAMIVAEINEFDAKGDKVDYLAYNKLLNDLRAKYENADFEV 214 R++A NGGFVGTL+SR QDSAMI+AEINEFDA G KVDYLAYNKLLNDLRAKYENADFEV Sbjct: 121 RDSANNGGFVGTLVSRKQDSAMIIAEINEFDANGKKVDYLAYNKLLNDLRAKYENADFEV 180 Query: 215 QIIGFAKQIGDVADGAEGVLKFCAMALLLTTVAVYWYCRSLPFTLLPVACSLVSLVWQFG 274 QIIGFAKQIGDVADGA+GVLKFC MALLLT +AVYWYCRSLPFTLLP+ CSLVSLVWQFG Sbjct: 181 QIIGFAKQIGDVADGAQGVLKFCIMALLLTALAVYWYCRSLPFTLLPIVCSLVSLVWQFG 240 Query: 275 TLRLLGYGLDPLAVLVPFLVFAIGVSHGVQQINTIVRGIASGQSCEAAARASFKGLLIPG 334 TL LLGYGLDPLAVLVPFLVFAIGVSHGVQQIN IVRGIA+G CE AARASF+GLL+PG Sbjct: 241 TLHLLGYGLDPLAVLVPFLVFAIGVSHGVQQINYIVRGIAAGMGCEEAARASFRGLLVPG 300 Query: 335 VLALVTALVSFITLVMIPIPMVRELAITASIGVGYKIITNLVMLPLAASLLKVGKTYAEA 394 VLALVTA VSFITL +IPIPMV+ELAITASIGVGYKIITNLVMLPLAASLLKV K YA+A Sbjct: 301 VLALVTAFVSFITLTLIPIPMVKELAITASIGVGYKIITNLVMLPLAASLLKVNKAYADA 360 Query: 395 AMRAQQARGRWLAVLSRAAQPKVARSIVVLTLLVLAGSAWYSHDRLVGTLQPGAPELHAN 454 AMRAQQ R RWL V +RAA P+ AR IVV+TL + A S WYS DRLVGTLQ GAPEL A+ Sbjct: 361 AMRAQQKRARWLQVFARAAHPRNARVIVVVTLALFAASVWYSSDRLVGTLQAGAPELRAD 420 Query: 455 ARYNQDARWIADNYGNGLDWLTVILATPANSCDKVAFGRYQDQFDTVMRHVPGVLSVSSF 514 +RYN DA+ I+DNY GLDWL+VILATP NSCDKVAFGRYQ+QFD MRHVPGV+SVSSF Sbjct: 421 SRYNLDAKSISDNYDTGLDWLSVILATPENSCDKVAFGRYQEQFDAAMRHVPGVMSVSSF 480 Query: 515 ADQMKIYNEGYNEGNPTMFTVPLDPANYAALAVEIGRVRGFLAKDCNMLATHLFLADHKA 574 A+QMKIYNEGYNEGNP+M++VPLDPANYAALAVEIGRVRGFL+KDC+MLATHL+L DHKA Sbjct: 481 AEQMKIYNEGYNEGNPSMYSVPLDPANYAALAVEIGRVRGFLSKDCSMLATHLYLTDHKA 540 Query: 575 STINGVIQAVKTYRDQHQLAGLEIRLAAGNAGVIAAVNDEVEKSELPMMLYVYGAIVLLV 634 STING+I AVK YR H L GL IRLAAGNAGVIAAVN+EVEKSELPMMLYVY AI++LV Sbjct: 541 STINGIIAAVKQYRAAHPLPGLTIRLAAGNAGVIAAVNEEVEKSELPMMLYVYAAIIVLV 600 Query: 635 FVVYRDWRAIIACCLPLTVATFIGYAFMKQLQIGLTVATLPVMVLAVGIGVDYAFYIYNR 694 F VYRD RA++ACCLPLTVATFIGYAFMKQLQIGLTVATLPVMVLAVGIGVDYAFYIY+R Sbjct: 601 FAVYRDLRAVVACCLPLTVATFIGYAFMKQLQIGLTVATLPVMVLAVGIGVDYAFYIYSR 660 Query: 695 LQLHLAAGIEIEQALHHAIQEVGIATIFTAITLAVGVATWSFSALKFQADMGKLLAFMFL 754 LQ+HLAAG I AL +IQE+G+ATIFTAITLA+GVATWSFS LKFQADMGKLLAFMF+ Sbjct: 661 LQMHLAAGEAIAVALEKSIQEIGVATIFTAITLAIGVATWSFSQLKFQADMGKLLAFMFI 720 Query: 755 VNLVMAMTALPAFAVVLEKMFPRKSPIKLNSALAH 789 VNL+MAMTALPAFAVVLE+MFPRK IK+NS + H Sbjct: 721 VNLIMAMTALPAFAVVLERMFPRKGKIKVNSMMNH 755 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,316,472 Number of extensions: 94933 Number of successful extensions: 462 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 459 Number of HSP's successfully gapped: 4 Length of query: 789 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 696 Effective length of database: 1,179,515 Effective search space: 820942440 Effective search space used: 820942440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 134 (56.2 bits)