BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2860.p (563 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527... 1089 0.0 gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940... 769 0.0 >gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspirillum seropedicae SmR1] Length = 563 Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/563 (93%), Positives = 545/563 (96%) Query: 1 MNKQIQHRIIALAAATLCSGGAQAITFEGETVSGNFDSTVSFGVGVRASKQGCGLVIGSS 60 MNKQI ++IIALAAATLCSGGAQA+TFEGETVSGNFDSTVSFGVGVRASKQ CGLVIGSS Sbjct: 1 MNKQIHYKIIALAAATLCSGGAQAMTFEGETVSGNFDSTVSFGVGVRASKQACGLVIGSS 60 Query: 61 GGNATPASGPSAPAGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR 120 GNA ASGPSAP GCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR Sbjct: 61 AGNAAGASGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGR 120 Query: 121 VSWLRDFSATRNTGNISGANPTGRSLSDEATNELHSKVRLLDLWVSKSFDLGEERARIRV 180 VSWLRD+SATRNTGNISG NPTGRSLSD+ATNELHSKVRLLDLWVSKSFDLGEERARIRV Sbjct: 121 VSWLRDYSATRNTGNISGGNPTGRSLSDDATNELHSKVRLLDLWVSKSFDLGEERARIRV 180 Query: 181 GNQVVNWGESLFIAGGINQTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGHGFSLESY 240 GNQVVNWGESLFIAGGINQTNAID+MRLSNPGTQLKEAILPAPMVNFATGLG GFS+E+Y Sbjct: 181 GNQVVNWGESLFIAGGINQTNAIDIMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETY 240 Query: 241 VQQGWESNYFPPVGSYWSSATVGIGADALGVPTTNRPRSAGQYGVALRYTPPGADVNYGL 300 VQQGWESNYFPPVGSYWS+ATVGIGA+ALGVP T+RPRS GQYGVALRYTPPGADVN+GL Sbjct: 241 VQQGWESNYFPPVGSYWSTATVGIGAEALGVPVTSRPRSTGQYGVALRYTPPGADVNFGL 300 Query: 301 YVMNYHDKSPVLSTANTPSGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLN 360 YVMNYHDKSPVLSTANTPSGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKD VSLN Sbjct: 301 YVMNYHDKSPVLSTANTPSGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDPVSLN 360 Query: 361 GSVANANGGLCMTNGKCYVETEKYQLAVTGMLSLSPSEHGAILKALGADTATLMLEAVAI 420 GSV NANGG CM NGKCYVE EKYQLAVTG+LSLSPSEHG++LKALGADTATLM+EAVAI Sbjct: 361 GSVPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPSEHGSVLKALGADTATLMVEAVAI 420 Query: 421 KYPNLKSAYGGIPVAAGLWGWGDDTTANASRTLANGGNTAGVGTSTSYGYNFDFSWVYDG 480 KYPNLKS+YGGIPVAAGLWGWG DTTANA+RTLANGGNTAGVG+STSYGYNFDFSWVYDG Sbjct: 421 KYPNLKSSYGGIPVAAGLWGWGYDTTANANRTLANGGNTAGVGSSTSYGYNFDFSWVYDG 480 Query: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNMAKFWG 540 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTF QNPAKWQVALN AKFWG Sbjct: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFMQNPAKWQVALNFAKFWG 540 Query: 541 GASVFDQPLRDRSFYGMTVSRNF 563 GASVFDQPLRDRSFYGMTVSRNF Sbjct: 541 GASVFDQPLRDRSFYGMTVSRNF 563 >gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspirillum seropedicae SmR1] Length = 581 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/563 (66%), Positives = 451/563 (80%), Gaps = 12/563 (2%) Query: 9 IIALAAATLCSGGAQAITFEGETVSGNFDSTVSFGVGVRASKQGCGLVIGS-SGGNATPA 67 ++ L A L SG AQA TFE E+VSGNFDSTV+ GVG+RA+K GC +IG+ +GG + Sbjct: 23 VLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGIRAAKPGCSSIIGTVNGGQPSGP 82 Query: 68 SGPSAPAGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDF 127 +G APAGCAD+LS NDQG+LNY+RG FTTYLKGTHEL+L +P+D KFLGRVSW+RDF Sbjct: 83 TGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTHELMLKLPDDFKFLGRVSWMRDF 142 Query: 128 SA-TRNTGNISGANPTGRSLSDEATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVN 186 +A T TG +SG G + A+ ++ +K RLLDLWVSK F +G++RAR+RVGNQVVN Sbjct: 143 AAATSTTGYVSGGG--GSTFPGNASGQVSNKTRLLDLWVSKEFSIGDQRARLRVGNQVVN 200 Query: 187 WGESLFIAGGINQTNAIDLMRLSNPGTQLKEAILPAPMVNFATGLGHGFSLESYVQQGWE 246 WGESLFI GGINQTNA+DLMRLS PGTQ+KEA+LPAPMVNFATGLG GFS+E+Y+QQGW+ Sbjct: 201 WGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGKGFSIETYLQQGWQ 260 Query: 247 SNYFPPVGSYWSSATVGIGADALGVPTTNRPRSAGQYGVALRYTPPGADVNYGLYVMNYH 306 NYFPPVGSYWS T+G GA LGVPTT+ PRS+GQYGVALRY+P +++N+GLY+MNYH Sbjct: 261 RNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVALRYSPKDSEMNFGLYLMNYH 320 Query: 307 DKSPVLSTANTP-SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDAVSLNGSVA- 364 DKSPV+ST+ + SG GYSYL+DRKM+G S NFP+GNWA+GTELSYRPKD ++LN S A Sbjct: 321 DKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAG 380 Query: 365 ---NANGGLCMTNGKCYVETEKYQLAVTGMLSLSPSEHGAILKAL-GADTATLMLEAVAI 420 NG C+ NG CYVET KYQLAVTG+LS++PS++ ILKAL GADTATLM EAV I Sbjct: 381 NSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKALGGADTATLMAEAVGI 440 Query: 421 KYPNLKSAYGGIPVAAGLWGWGDDTTANASRTLANGGNTAGVGTSTSYGYNFDFSWVYDG 480 YPN+KSAY GIPVAAG WGWG DT+ANA T A G VGT+ SYGYN DFSWVYDG Sbjct: 441 YYPNMKSAYQGIPVAAGNWGWGYDTSANARATGA--GTPPSVGTALSYGYNLDFSWVYDG 498 Query: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFTQNPAKWQVALNMAKFWG 540 S+IPGWQV+PE+++F A+ GRTPN TFM+GAK ANF V+F QNPAKWQ +LN A FWG Sbjct: 499 SLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWG 558 Query: 541 GASVFDQPLRDRSFYGMTVSRNF 563 G ++FDQPLR R+F G T + NF Sbjct: 559 GDTIFDQPLRGRNFVGATATYNF 581 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,826,126 Number of extensions: 80671 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 2 Length of query: 563 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 473 Effective length of database: 1,193,720 Effective search space: 564629560 Effective search space used: 564629560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)