BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2859.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526...   870   0.0  
gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941...   726   0.0  

>gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/453 (94%), Positives = 441/453 (97%)

Query: 1   MKVINMSVMALALASGFAHAATPADLGGSLTPLGGEKAGGNGVPDWKEENVVLPGWSYGK 60
           MK+  MSV ALALA+ FAHAATPADLG SLTPLGG+KAGGNGVPDWK+ENV LPGWSYGK
Sbjct: 1   MKITKMSVTALALAAAFAHAATPADLGASLTPLGGDKAGGNGVPDWKDENVTLPGWSYGK 60

Query: 61  LRRDSFKYKDDKKSETIDASNVDKYASKLSPGQVALIKQIKGYKMDIYPSHRYCSAPDFV 120
           LRRD FKYKDDKKSETIDASNVDKYASKLS GQ+ALIKQIKGYKMD+YPSHRYCSAPDFV
Sbjct: 61  LRRDFFKYKDDKKSETIDASNVDKYASKLSAGQIALIKQIKGYKMDVYPSHRYCSAPDFV 120

Query: 121 VENTKKNTSAKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVALEWKSTITAV 180
           V+NTKKNTSAKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVA EWKSTITAV
Sbjct: 121 VDNTKKNTSAKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKSTITAV 180

Query: 181 SPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF 240
           SPRKG SEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF
Sbjct: 181 SPRKGGSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTTF 240

Query: 241 LNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK 300
           LNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK
Sbjct: 241 LNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKK 300

Query: 301 EMYVPYGSFGATDFKAKFEDVAGDEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFY 360
           EMYVPYGSFGATDFKAKFEDVAG+EYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFY
Sbjct: 301 EMYVPYGSFGATDFKAKFEDVAGEEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFY 360

Query: 361 VDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETNSCDQAGFAQYNLAEGRYVFDLHAAG 420
           VDEDSWNLVAADDYDAQGKLWKHREAY+IPVYET SCDQAGF QYNLAEGRYVFDLH+AG
Sbjct: 361 VDEDSWNLVAADDYDAQGKLWKHREAYIIPVYETGSCDQAGFTQYNLAEGRYVFDLHSAG 420

Query: 421 TGRDMAWEVDGKGNPRAKASFYSADNLRAISDR 453
           TG+DMAWEVDGKGNPRAKASFYSADNLRAISDR
Sbjct: 421 TGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 453


>gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941
           [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/454 (74%), Positives = 393/454 (86%), Gaps = 1/454 (0%)

Query: 1   MKVINMSVMALALASGFAHAATPADLGGSLTPLGGEKAGGNGVPDWKEENVVLPGWSYGK 60
           MK   + +  LA+ +  AHAA+  DLG +LTPLGG+KA G GVP+WK ENV LPGWSYGK
Sbjct: 1   MKRTILGLSILAVGATLAHAASVQDLGTTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 60

Query: 61  LRRDSFKYKDDKKSETIDASNVDKYASKLSPGQVALIKQIKGYKMDIYPSHRYCSAPDFV 120
           LR+D FKYKD+K +E IDASNVDKYA  L+PGQVALIKQ+KGYKMDIYP+HRYC+APDFV
Sbjct: 61  LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 120

Query: 121 VENTKKNTS-AKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVALEWKSTITA 179
           VENTKKN +  K+GADGWSLAEA VPGIPFPLPK+G EVMYNSKMRYRG+ +++ +TITA
Sbjct: 121 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGLGVDFPNTITA 180

Query: 180 VSPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQALSLTT 239
           VSPRKGS+EWIKA  Q T+F+P   KGS  LSTL  VE+YTY AY+SPTALAGQAL++TT
Sbjct: 181 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSSPTALAGQALTVTT 240

Query: 240 FLNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGK 299
           +LN+PG ETFYYFPGQRRVRRMPSYAYD+PQIGMENQYT+DEP VFNGT+DRFDWKLVGK
Sbjct: 241 YLNRPGAETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGK 300

Query: 300 KEMYVPYGSFGATDFKAKFEDVAGDEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTF 359
           KE+Y+ Y SFGA +FKA F+D+A  +++AENARRYELHRVWVVEATVK GVRHLAPKRTF
Sbjct: 301 KEIYIAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTF 360

Query: 360 YVDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETNSCDQAGFAQYNLAEGRYVFDLHAA 419
           YVDEDSWNLV +DDYDAQ KLWKHRE Y+IPVYET +CD +GFAQYNLAEGRY+ D H+A
Sbjct: 361 YVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDLSGFAQYNLAEGRYLMDSHSA 420

Query: 420 GTGRDMAWEVDGKGNPRAKASFYSADNLRAISDR 453
           GTG+D+ WE + K NPR + +FYSADNLRAISDR
Sbjct: 421 GTGKDIRWETEAKDNPRLRDNFYSADNLRAISDR 454


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,504,761
Number of extensions: 65311
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)