BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2858.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 602 e-174 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 142 3e-35 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 100 1e-22 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 87 2e-18 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 82 9e-17 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 602 bits (1553), Expect = e-174, Method: Compositional matrix adjust. Identities = 287/330 (86%), Positives = 308/330 (93%) Query: 1 MSCDDFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFVGALAMVQTEEFCFIRESTNTA 60 M D FSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRF GAL MVQTE+FCFIRE TNTA Sbjct: 1 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA 60 Query: 61 LHERIVPPPDQLVIGLCNTEQYGHLLNGRPLTQDQLVVLDGSRAHHIRTTGPIELVGMSV 120 LHER+VPPP Q+VIG+CN+ + GHLLNGRPL QDQL+VLDGSRAHHIRTTGPIEL+G+S+ Sbjct: 61 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM 120 Query: 121 QRDLFLSQLHEQDEASVRKWLDLSVLQLDAATAGMLRHYFSVVFELLDAPSGKAARPISP 180 QRDLFLSQLHEQD+ASVRKWLDLSVLQLD ATAGMLRHYFS+ F+LL+ GK PISP Sbjct: 121 QRDLFLSQLHEQDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISP 180 Query: 181 RALASTAISNVALALSLNHGSHELESTLPSRQRRERIVQNAIDYMRLHAGEEIGILDVCR 240 RALAST ISNVALALSLNHGS++LESTLPSRQRRERIVQNAIDYMR HAGEEIGILDVCR Sbjct: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTDQDRSHDRQATIGNLAALC 300 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRT +DR+HDR ATIGNLAALC Sbjct: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 Query: 301 GFNHPSRFASEYKKMFGVLPSETVLKAVAE 330 GFNHPSRFASEYKKMFGVLPSETVL+AV++ Sbjct: 301 GFNHPSRFASEYKKMFGVLPSETVLRAVSD 330 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 142 bits (359), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 153/309 (49%), Gaps = 14/309 (4%) Query: 15 DVDEQASMLTGWEQEYQQLGSGRFVGALAMVQTEEFCFIRESTNTALHERIVPPPDQLVI 74 DVDE A LT WEQ Y Q+ G F G L Q++ RE+++ A+ + PD Sbjct: 27 DVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYWF 86 Query: 75 GLCNTEQYGHLLNGRPLTQDQLVVLDGSRAHHIRTTGPIELVGMSVQRDLFLSQLHEQDE 134 G+ G +NGR + +D ++ G+ + T E+ G+ VQRD Q Sbjct: 87 GI-EARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDAL--QASAARL 143 Query: 135 ASVRKWLDLSVLQLDAATAGMLRHYFSVVFELLDAPSGKAARPISPRALASTAISNVALA 194 W L +L G L + LL A +G+A+ + L A+ VAL Sbjct: 144 GCQPDWQRLGQAELLKVDHGGLEDCRQQIAALL-AMAGQASGAHAALQLRQEAVL-VALL 201 Query: 195 LSLNHGSHELESTLPSRQRRERIVQNAIDYMRLHAGEEIGILDVCRATHVSRRTLQYCFE 254 L+ G E E+ S RR RIV +A ++ H + + +C A HVSRRTLQYCFE Sbjct: 202 AMLDEGEIEAEAG-ASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQYCFE 260 Query: 255 ERLDISPLQYLKALRLNAAHREIKRRTDQDRSHDRQA--TIGNLAALCGFNHPSRFASEY 312 + L +SP+ YL++LRLN R + RQA +IG++AA GF + S+F+ +Y Sbjct: 261 DVLGMSPMSYLRSLRLNGVRRALC------HGDGRQAVGSIGDIAAAWGFANFSQFSCDY 314 Query: 313 KKMFGVLPS 321 KK+FG PS Sbjct: 315 KKLFGQTPS 323 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 14/323 (4%) Query: 7 SVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFVGALAMVQTEEFCFIRESTNTALHERIV 66 S+H +F DV A+ + W+Q Y Q+ +G+ +L + T RE N + + Sbjct: 4 SIH--RFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGE 61 Query: 67 PPPDQLVIGLCNTEQYGHLLNGRPLTQDQLVVLDGSRAHHIRTTGPIELVGMSVQRDLFL 126 P DQ+ + GR ++ L G +L+ ++ RDLF Sbjct: 62 APRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFE 121 Query: 127 SQLHEQ-DEASVRKWLDLSVLQ-----LDAATAGMLRHYFSVVFELLDAPSGKAARPISP 180 LH+ D + L V++ L A +L + + + D P + Sbjct: 122 EHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQT 181 Query: 181 RALASTAISNVALALSLNHGSHELESTLPSRQRRERIVQNAIDYMRLHAGEEIGILDVCR 240 S++ L + + + R IV+ + A I +VC+ Sbjct: 182 LQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVCQ 241 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTDQDRSHDRQATIGNLAALC 300 VSRRT+Q F+ + +PL YL+ +RLN RE+ T Q+ A+IG++A+ Sbjct: 242 RLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQE------ASIGDIASRW 295 Query: 301 GFNHPSRFASEYKKMFGVLPSET 323 GF H S FA +Y+ +FG LPS+T Sbjct: 296 GFFHLSHFAEDYQALFGELPSQT 318 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/335 (28%), Positives = 151/335 (45%), Gaps = 25/335 (7%) Query: 1 MSCDDFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFVGALAMVQTEEFCFIRESTNTA 60 + F+V+++ DE L + + Q+ G+ +L+M Q RE ++ Sbjct: 18 LPVGSFTVYSL-----DEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKP 72 Query: 61 LHERIVPPPDQLVIGLCNTEQYGHLLNGRPLTQDQLVVLDGSRAHHIRTTGPIELVGMSV 120 L +R V P LV + L+GR + +V DG I T ++LV + V Sbjct: 73 LLKRGVNWPGSLVFSFVVQARGRGWLSGRAVDPQASLVADGEALPEIITPAELDLVFIVV 132 Query: 121 QRDLFLSQLHE----QDEASVRKWLDLSVLQLDAATAGMLRHYFSVVF--ELLDAPSGKA 174 R ++ + Q S R DL A +LR F ++ L PS Sbjct: 133 DRQWLSERIGDGASRQIAGSAR---DLRCFAAWHEHALVLRRLFPLLPGQARLGQPSPSI 189 Query: 175 AR-PISPRALA---STAISNVALALSLNHGS-HELESTLPSRQRRERIVQNAIDYMRLHA 229 ++PR+ A S A V AL GS H +E+ + +R ++ A MR A Sbjct: 190 GHCALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETDHKR--LIDQARRLMRGDA 247 Query: 230 GEEIGILDVCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTDQDRSHDR 289 E + V VSRR LQ CF + I +++++A RLN ++++ + R Sbjct: 248 PERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLN----QVRKALVEARRAGL 303 Query: 290 QATIGNLAALCGFNHPSRFASEYKKMFGVLPSETV 324 + +IG++AA GF H SRFA++Y+ MFG LPS+T+ Sbjct: 304 EVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTL 338 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 15/323 (4%) Query: 11 VQFSDVDEQASMLTGWEQEYQQLGSGRFVGALAMVQTEEFCFIRESTNTALHERIVPPPD 70 ++F DV E A+ ++ W Y Q+ +G+ +L + T RE N + ++ P + Sbjct: 6 LRFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPRE 65 Query: 71 QLVIGLCNTEQYGHLLNGRPLTQDQLVVLDGSRAHHIRTTGPIELVGMSVQRDLFLSQL- 129 Q+ + GR + + ++ L G +L ++ R LF +QL Sbjct: 66 QVCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLE 125 Query: 130 HEQDEASVRKWLDLSVLQLDAATAGMLRHYFSVVF--ELLDAPSGKAARPISPRALASTA 187 H + + V+++ + R +F +L G P + L + Sbjct: 126 HTASPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIEDGHGQHPQHEQELELSL 185 Query: 188 ISNVALALSL-NHGSHELESTLPSRQRRERIVQNAIDYMRLHAGEEIGILDVCRATHVSR 246 ++ + LS + G+ ST+ R IV A I +VC VSR Sbjct: 186 LAELLALLSAPDCGASRQISTI-----RSYIVDKLHRQTMNDAINVPSIFEVCEQMQVSR 240 Query: 247 RTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTDQDRSHDRQATIGNLAALCGFNHPS 306 RT+Q F+ + +P YL+ +RLN R + + + Q TIG++A+ GF H S Sbjct: 241 RTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAE------QITIGDIASRWGFFHLS 294 Query: 307 RFASEYKKMFGVLPSETVLKAVA 329 FA +Y+ +F LPS+T+ ++ A Sbjct: 295 HFAEDYRALFCELPSQTIRRSHA 317 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 994,014 Number of extensions: 39265 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 6 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)