BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2856.p (726 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1234 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 297 2e-81 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 285 7e-78 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 252 9e-68 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 229 5e-61 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1234 bits (3192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/717 (83%), Positives = 657/717 (91%) Query: 1 MNQTDNDPDQTGTDSGLLCLIMLARLHGIAADAQQLQHRFGRQPFDVQTILLGARTLGMK 60 MN+TD D DSGL CL+M+ARLHGIAADAQQLQHRFGRQPF++QTILL AR LGM Sbjct: 1 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT 60 Query: 61 ARCIRQRPGRLEHTPLPAIGIDHAGRFFVLAKLDVATGQDNAPVRILIQQPGQPPQVMSR 120 A+C+ Q+ RLE TPLPAIGID GRFFVLAK++ A G+ RIL+QQPGQ PQV+S+ Sbjct: 61 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQ 120 Query: 121 DEFTAFWCGQVILVTSQATYSGESARFDFSWFIPAVVKYRKVLGEVLLISLVLQIIGLVT 180 +F A W GQVIL TS+A+Y+ ES+RFDFSWFIPAVVKYRK L EVLLISLVLQ+IGL+T Sbjct: 121 RDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLIT 180 Query: 181 PLFFQVVMDKVLVNHAMMTLNVIAVGLIAATLFEALLAGIRTAIFAKASSKIDVELGARL 240 P+FFQVVMDKVLVNHAMMTLNVIAVGLIAAT+FEA+L GIRTAIFA ASSKIDVELG+RL Sbjct: 181 PMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRL 240 Query: 241 FSHLLSLPLAYFQVRRAGDSIARVRELENIRSFLTSNAMTLVLDLVFSFIFLAVMLWYSV 300 FSHLLSLPL+YFQVRRAGDSIARVRELENIRSFLT NAMTLVLD++FSF+FL VMLWYSV Sbjct: 241 FSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSV 300 Query: 301 PLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPH 360 LSLIVLASIPVY+LLSL+FTP+LR RLNDKFNKSAENQSFLVETLTGMDTVKAMAVEP Sbjct: 301 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPR 360 Query: 361 WQKKWDQQLAGYVAAGLTTTNISLLASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELV 420 WQ+KWD+QLA YVAAGLTTTNISLLASG+V LVSKLV VGIMW+GAL VV N++SVGELV Sbjct: 361 WQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELV 420 Query: 421 AFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEVAGQRTRLPRVSGAIAFE 480 AFNMLAGQVA+PILRLAQLWNDFQQ+GISMSRLADVLDAR+EVAG RTRLPRV+GAI+F+ Sbjct: 421 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISFD 480 Query: 481 RVNFRYRPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQ 540 V+FRYRPE PEVIR LSLQI+PGEVIGIVGRSGSGKSTLAKLVQRLY+CE+GRISVDGQ Sbjct: 481 LVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQ 540 Query: 541 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICEL 600 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIAL DP+ PIE++I AAKLAGAHDFICEL Sbjct: 541 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICEL 600 Query: 601 PEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI 660 PEGYDT+VGEQG GLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI Sbjct: 601 PEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI 660 Query: 661 CAGRTVLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLRGGIYAHLHALQAGQ 717 CAGRTVLIIAHRL+AVR+ADRI+VMERG V ESG H+EL+ L GGIYAHLH LQAG Sbjct: 661 CAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAGH 717 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 297 bits (760), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 210/555 (37%), Positives = 312/555 (56%), Gaps = 22/555 (3%) Query: 178 LVTPLFFQVVMDKVLV---NHAMMTLNVIAV---GLIAATLFEALLAGIRTAIFAKASSK 231 LV P +MD VL+ N A + ++ + GL+ A + L RT I A S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 232 IDVELGARLFSHLLSLPLAYFQVRRAGDSIARV-RELENIRSFLTSNAMTLVLDLVFSFI 290 I +L +SHLL L YF +R GD +AR+ E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 291 FLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNK----SAENQSFLVETL 346 A+++ + L+L+ L +P + ++R RL F K +E + L +T+ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDRLRHGFEKIDRIWSEVTNVLADTI 372 Query: 347 TGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTTTNISLLASGSVSLVSKLVGVGIMWM-G 405 G+ VKA A E ++ + + I L + +V+ +++ VG+ ++W+ G Sbjct: 373 PGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTE-VGLLVVWVFG 431 Query: 406 ALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEVA- 464 QV NQ++VG L AF + + ++++ + Q+ R+ D+LD S V Sbjct: 432 IWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPE 491 Query: 465 -GQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGIVGRSGSGKSTLAKL 523 L +V GAI + FRY A VIR +SL I PGE+IG+VG SGSGKST+ L Sbjct: 492 PANPVHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNL 549 Query: 524 VQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAAPIEE 583 + R Y G I +DG DI + + R+ IG+VLQE LF +I +NIA P A EE Sbjct: 550 ICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREE 609 Query: 584 VIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFDEATS 643 +IAAA+ A AH+FI LP+GYD+LVGE+G LSGG+RQRI+IARAL+ +P ILI DEATS Sbjct: 610 IIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATS 669 Query: 644 ALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNVVESGRHEELLRLR 703 ++D +EK IQ + + GRT + IAHRL+ +R+ADR++V++RG VVE G HEEL+ R Sbjct: 670 SVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELM-AR 728 Query: 704 GGIYAHLHALQAGQP 718 G Y L+ QA P Sbjct: 729 EGHYYKLYQAQARNP 743 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 285 bits (730), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 180/524 (34%), Positives = 295/524 (56%), Gaps = 12/524 (2%) Query: 209 AATLFEALLAGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGDSIARV-REL 267 A L AL +R +FA+ + + + ++F HL +L L + R+ G + R Sbjct: 90 ALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGT 149 Query: 268 ENIRSFLTSNAMTLVLDLVFSFIFLAVML-WYSVPLSLIVLASIPVYLLLSLIFTPMLRS 326 + S ++ +++ L+ + LA ++ Y V S+I ++ Y+L ++ T R+ Sbjct: 150 RGVSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEW-RT 208 Query: 327 RLNDKFNK-SAENQSFLVETLTGMDTVKAMAVEPHWQKKWDQQLAGYVAAGLTT-TNISL 384 N+ + + +++L +TVK E +++D+ L Y A + + +++SL Sbjct: 209 HFRRTMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSL 268 Query: 385 LASGSVSLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQ 444 L +G ++++ V + I+W + V+D +++G++V N Q+ P+ L L+ + + Sbjct: 269 LNTGQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIK 327 Query: 445 QVGISMSRLADVLDARSEVAGQRTRLP-RVSGA-IAFERVNFRYRPEAPEVIRALSLQIQ 502 Q M RL +L+ EVA P + GA + F+ V+F Y +++ + +Q Sbjct: 328 QSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDFTVQ 386 Query: 503 PGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENT 562 G +VG SGSGKSTL++L+ R Y ++G I +DGQD+ + ASLRQ IG+V Q+ Sbjct: 387 AGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTV 446 Query: 563 LFSRSIRDNIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQR 622 LF+ +I NIA P A E+++AAAK A HDFI LP+GY ++VGE+G LSGG++QR Sbjct: 447 LFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQR 506 Query: 623 IAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRI 682 +AIAR L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRL+ + A +I Sbjct: 507 VAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQI 566 Query: 683 LVMERGNVVESGRHEELLRLRGGIYAHLHALQAGQPAAAQGGKS 726 LV++ G +VE G H LL + GG+YA + Q Q A + G S Sbjct: 567 LVLDHGRIVERGTHAGLL-MAGGLYAQMWLRQ--QAGADEEGGS 607 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 252 bits (643), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 180/495 (36%), Positives = 279/495 (56%), Gaps = 16/495 (3%) Query: 231 KIDVELGARLFSHLLSLPLAYFQVRRAGDSIARVRELENIRSFLTSNAMTLVLDLVFSFI 290 ++ +L + +++H+++ +F+ + G+ ++R+ + L ++++ L FI Sbjct: 121 RVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFI 180 Query: 291 FLAVMLWY-SVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKSAENQSFLVETLTGM 349 ML++ S L+ I++ + +L + + +R ++ A+ + E L M Sbjct: 181 GGMSMLFFTSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAM 240 Query: 350 DTVKAMAVEPHWQKKWDQQLAGYVAAGLTTTNI-SLLASGSVSLVSKLVGVGIMWMGALQ 408 TV+A E +++ Q + + SLL ++ LV + V ++W+GA Sbjct: 241 PTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAI-VFVLWLGAHA 299 Query: 409 VVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISMSRLADVLDARSEVAGQRT 468 V++ +S GEL F + A VA + L+++ D Q+ + RL D+L A S V Q Sbjct: 300 VMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPV--QSV 357 Query: 469 RLPRV-------SGAIAFERVNFRY--RPEAPEVIRALSLQIQPGEVIGIVGRSGSGKST 519 LP A+ + V+F Y RP P + + LSL +QPGE + IVG SG+GK+T Sbjct: 358 LLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQ-LSLTVQPGETVAIVGPSGAGKTT 416 Query: 520 LAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDPAA 579 L +L+ R Y + G+I +DG DI +D +LR IG+V Q+ +FS + +NI P A Sbjct: 417 LFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEA 476 Query: 580 PIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALITNPGILIFD 639 EVIAAA++A AH+FI LP Y +GE+G LSGGQRQRIAIARAL+ NP +L+ D Sbjct: 477 SDAEVIAAAQMAAAHEFIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLD 536 Query: 640 EATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNVVESGRHEEL 699 EATSALD ESE+++Q + GRT L+IAHRL V+ ADRI+V+E G +VESG H EL Sbjct: 537 EATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAEL 596 Query: 700 LRLRGGIYAHLHALQ 714 + R G+YA L ALQ Sbjct: 597 V-ARDGLYAGLAALQ 610 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 229 bits (585), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 175/570 (30%), Positives = 285/570 (50%), Gaps = 16/570 (2%) Query: 159 YRKVLGEVLLISLVLQIIGLVTPLFFQVVMDKVLVNHAMMTLNVIAVGLIAATLFEALLA 218 Y+K L + +V V P FQV++DK V +L ++ V +I + Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Query: 219 GIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGDSI-ARVRELENIRSFLTSN 277 + + S++I EL ++F+ +L LPL ++ G I + + E++ I +T Sbjct: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 Query: 278 AMTLVLDLVFSFIFLAVMLWYSVPLSLIVLASIPVYLLLSLIFTPMLRSRLNDKFNKSAE 337 +++ + LA +L+ + L+++ L +P+ L+ L+ D +AE Sbjct: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAE 195 Query: 338 NQSFLVETLTGMDTVKAMAVEPHWQKKWD---QQLAGYV----AAGLTTTNISLLASGSV 390 + ET +K + + +++++ + L Y AA +T I+ L + + Sbjct: 196 MTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLMTATA 255 Query: 391 SLVSKLVGVGIMWMGALQVVDNQLSVGELVAFNMLAGQVAAPILRLAQLWNDFQQVGISM 450 V ++ M +Q + Q++VG V+F + P+ +LA++ Q+ + Sbjct: 256 VAV-------VIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAA 308 Query: 451 SRLADVLDARSEVAGQRTRLPRVSGAIAFERVNFRYRPEAPEVIRALSLQIQPGEVIGIV 510 + ++D +E R +G + F V F Y ++ ++L ++ GE I V Sbjct: 309 EEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFV 368 Query: 511 GRSGSGKSTLAKLVQRLYVCESGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRD 570 G SG GKSTL L+ Y C SG I +DG+DI I SLRQQI +V Q LF ++ Sbjct: 369 GMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAA 428 Query: 571 NIALVDPAAPIEEVIAAAKLAGAHDFICELPEGYDTLVGEQGCGLSGGQRQRIAIARALI 630 NIA D V AA + A D + LPEG T +G+ G LSGGQRQR+AIARA+ Sbjct: 429 NIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIY 488 Query: 631 TNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLTAVREADRILVMERGNV 690 + ILI DEATSALD ESE+ +Q + ++ GRT +IAHRL+ + ADRI+V+ G + Sbjct: 489 KDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQI 548 Query: 691 VESGRHEELLRLRGGIYAHLHALQAGQPAA 720 E G H+ LL + G+YA+L+ LQ Q A+ Sbjct: 549 AEIGTHQALLE-QEGVYANLYRLQFSQQAS 577 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,029,678 Number of extensions: 82080 Number of successful extensions: 762 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 602 Number of HSP's successfully gapped: 131 Length of query: 726 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 634 Effective length of database: 1,184,250 Effective search space: 750814500 Effective search space used: 750814500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 134 (56.2 bits)