BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2852.p (730 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1160 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 285 8e-78 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 284 2e-77 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 242 6e-65 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 229 7e-61 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/714 (77%), Positives = 642/714 (89%), Gaps = 4/714 (0%) Query: 6 VNDAAEDVGSAAVDTGLQCLMMMAKLHGIAADALQLQHQFGRQPFHLDTVLLAAKSLGMK 65 +N+ +D A +D+GLQCLMMMA+LHGIAADA QLQH+FGRQPF + T+LLAA+ LGM Sbjct: 1 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT 60 Query: 66 ARCVRTEMMRLDRIALPAMGIDRSGRFFLIGKLDQTQTP----WRILIQQPGQSLRVMTS 121 A+C+ + RL+R LPA+GIDR+GRFF++ K++Q Q RIL+QQPGQ+ +V++ Sbjct: 61 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQ 120 Query: 122 PEFEQFWSGQMVLLTSKASFAAEMAKFDFTWFIPSIVKYRKMIVEVLLLSLVLQIIGLVT 181 +FE WSGQ++L TSKAS+A E ++FDF+WFIP++VKYRK + EVLL+SLVLQ+IGL+T Sbjct: 121 RDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLIT 180 Query: 182 PMFFQVVMDKVLVNNAMTTLNVIAIGLLAATVFEAVLTAIRTAVFARTSSKIDVELGARL 241 PMFFQVVMDKVLVN+AM TLNVIA+GL+AATVFEAVLT IRTA+FA SSKIDVELG+RL Sbjct: 181 PMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRL 240 Query: 242 FKHLLSLPISYFQARRAGDSIARIRELENIRTFLTSNAMTLVLDLIFSFIFIAVMFWYSV 301 F HLLSLP+SYFQ RRAGDSIAR+RELENIR+FLT NAMTLVLD++FSF+F+ VM WYSV Sbjct: 241 FSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSV 300 Query: 302 PLSLIVLASIPIYLLLSLIFTPILRARLNEKFNKGAENQAFLVETLTGMDTVKAMAVEPR 361 LSLIVLASIP+Y+LLSL+FTP+LR RLN+KFNK AENQ+FLVETLTGMDTVKAMAVEPR Sbjct: 301 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPR 360 Query: 362 WQQKWDQQLAAYVAAGLTTTNIGLVASGSVGLISKLVTVGIMWLGAKLVVENQLSVGELV 421 WQQKWD+QLAAYVAAGLTTTNI L+ASG+VGL+SKLVTVGIMWLGA LVV+N++SVGELV Sbjct: 361 WQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELV 420 Query: 422 AFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLDARSEVAGQKTRIPKLAGAISFH 481 AFNMLAGQV+SPILRLAQLWNDFQQ+GISMSRL DVLDAR+EVAG +TR+P++ GAISF Sbjct: 421 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISFD 480 Query: 482 QVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQ 541 V FRYRP+ +VIR +SLQ++PGEVIGIVGRSGSGKSTL KLVQRLY+C+ GR+SVDGQ Sbjct: 481 LVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQ 540 Query: 542 DIAVIDTASLRQQIGVVLQENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICEL 601 DIA+IDTASLRQQIGVVLQEN LFSRSIRDNIALADPS PIE II AA+LAGAHDFICEL Sbjct: 541 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICEL 600 Query: 602 PEGYDTLVGEHGSGLSGGQRQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKI 661 PEGYDT+VGE GSGLSGGQRQRIAIARALI NPGILIFDEATSALDYESE++IQDNMR+I Sbjct: 601 PEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI 660 Query: 662 CAGRTVLIIAHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQ 715 CAGRTVLIIAHRLSAVRDA RIIVMERG++AESG H+EL+ +P GIYAHL +LQ Sbjct: 661 CAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 285 bits (729), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 201/555 (36%), Positives = 301/555 (54%), Gaps = 21/555 (3%) Query: 179 LVTPMFFQVVMDKVLV---NNAMTTLNVIAI---GLLAATVFEAVLTAIRTAVFARTSSK 232 LV P +MD VL+ N A ++ + GLL A V L RT + A S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 233 IDVELGARLFKHLLSLPISYFQARRAGDSIARI-RELENIRTFLTSNAMTLVLDLIFSFI 291 I +L + HLL L YF +R GD +ARI E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 292 FIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK----GAENQAFLVETL 347 A++ + L+L+ L +P + ++R RL F K +E L +T+ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDRLRHGFEKIDRIWSEVTNVLADTI 372 Query: 348 TGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSVGLISKLVTVGIMWLGA 407 G+ VKA A E R ++ + + I + + +V ++++ + + G Sbjct: 373 PGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGI 432 Query: 408 KLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGISMSRLGDVLDARSEVA-- 465 V NQ++VG L AF + + + ++++ + Q+ R+ D+LD S V Sbjct: 433 WQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEP 492 Query: 466 GQKTRIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLV 525 + K+ GAI + FRY A VIR++SL + PGE+IG+VG SGSGKST+ L+ Sbjct: 493 ANPVHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLI 550 Query: 526 QRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIRDNIALADPSLPIETI 585 R Y G + +DG DI + + R+ IG+VLQE LF +I +NIA P E I Sbjct: 551 CRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEI 610 Query: 586 IAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARALIGNPGILIFDEATSA 645 IAAAR A AH+FI LP+GYD+LVGE G LSGG+RQRI+IARAL+ +P ILI DEATS+ Sbjct: 611 IAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSS 670 Query: 646 LDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPN 705 +D +E+ IQ + + GRT + IAHRLS +R A R++V++RGQ+ E G HEEL+ Sbjct: 671 VDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMA-RE 729 Query: 706 GIYAHLFQLQG-DPQ 719 G Y L+Q Q +P+ Sbjct: 730 GHYYKLYQAQARNPE 744 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 284 bits (726), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 181/520 (34%), Positives = 292/520 (56%), Gaps = 15/520 (2%) Query: 216 AVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARI-RELENIRTF 274 A+ T +R +FAR + + + ++F+HL +L + + R+ G I R + + Sbjct: 96 ALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSL 155 Query: 275 LTSNAMTLVLDLI-FSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPI---LRARLN 330 ++ +++ LI + + ++ Y V S+I ++ Y+L ++ T R +N Sbjct: 156 VSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMN 215 Query: 331 EKFNKGAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTT-TNIGLVASG 389 E + A +A +++L +TVK E +++D+ L Y A + + +++ L+ +G Sbjct: 216 E-LDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTG 272 Query: 390 SVGLISKLVTVGIMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGI 449 +I+ VT+ I+W V++ +++G++V N Q+ P+ L L+ + +Q Sbjct: 273 QSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLA 331 Query: 450 SMSRLGDVLDARSEVAGQKTRIP-KLAGA-ISFHQVCFRYRPDAQDVIRDVSLQVKPGEV 507 M RL +L+ EVA P K GA + F V F Y + Q ++ DV V+ G Sbjct: 332 DMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERNRQ-ILFDVDFTVQAGTT 390 Query: 508 IGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSR 567 +VG SGSGKSTL++L+ R Y D G + +DGQD+ + ASLRQ IG+V Q+ VLF+ Sbjct: 391 TAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFND 450 Query: 568 SIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIA 627 +I NIA P E I+AAA+ A HDFI LP+GY ++VGE G LSGG++QR+AIA Sbjct: 451 TIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIA 510 Query: 628 RALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVME 687 R L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A +I+V++ Sbjct: 511 RTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLD 570 Query: 688 RGQIAESGRHEELLKIPNGIYAHLF-QLQGDPQSQGVVPA 726 G+I E G H LL + G+YA ++ + Q +G PA Sbjct: 571 HGRIVERGTHAGLL-MAGGLYAQMWLRQQAGADEEGGSPA 609 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 242 bits (618), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 191/589 (32%), Positives = 311/589 (52%), Gaps = 35/589 (5%) Query: 153 FIPSIVKYRKMIVEVLLLSLVLQIIGLVTPMFFQVVMD---KVLVNNAMTTLNVIAIGLL 209 +P + Y+K + L +V L P F+ ++D + + + +N+ + L Sbjct: 39 LLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFLALF 98 Query: 210 AATVFEAVLTAIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIARIRELE 269 V TA+R + + ++ +L + ++ H+++ +F+ + G+ ++R+ Sbjct: 99 GVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDT 158 Query: 270 NIRTFLTSNAMTLVLDLIFSFIF-IAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRAR 328 + L ++++ L FI ++++F+ S L+ SI I +L +++ + R Sbjct: 159 TLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLT-----SIIIVMLAAVVLPIVFYGR 213 Query: 329 LNEKFNKGAENQ-----AFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNI 383 K ++ ++++ A E L M TV+A E +++ Q V T Sbjct: 214 RVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQS----VERAFGTAME 269 Query: 384 GLVASGSVGLISKLVTVG----IMWLGAKLVVENQLSVGELVAFNMLAGQVSSPILRLAQ 439 + A + +++ L+ G ++WLGA V+E +S GEL F + A V+ + L++ Sbjct: 270 RVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSE 329 Query: 440 LWNDFQQVGISMSRLGDVLDARSEVAGQKTRIPKL-------AGAISFHQVCFRY--RPD 490 + D Q+ + RL D+L A S V Q +P+ A++ V F Y RP Sbjct: 330 VMGDTQRAAGATERLLDLLAAHSPV--QSVLLPEKLPPRTANGAALTVQGVDFHYPSRP- 386 Query: 491 AQDVIRDVSLQVKPGEVIGIVGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTAS 550 + +SL V+PGE + IVG SG+GK+TL +L+ R Y +G++ +DG DI +D + Sbjct: 387 GHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQA 446 Query: 551 LRQQIGVVLQENVLFSRSIRDNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVG 610 LR IG+V Q+ V+FS + +NI P +IAAA++A AH+FI LP Y +G Sbjct: 447 LRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGSYACFLG 506 Query: 611 EHGSGLSGGQRQRIAIARALIGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLII 670 E G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESER++Q + GRT L+I Sbjct: 507 ERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVI 566 Query: 671 AHRLSAVRDAHRIIVMERGQIAESGRHEELLKIPNGIYAHLFQLQGDPQ 719 AHRL+ V+ A RIIV+E G+I ESG H EL+ +G+YA L LQ Q Sbjct: 567 AHRLATVQRADRIIVLEHGRIVESGTHAELVA-RDGLYAGLAALQFQTQ 614 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 229 bits (583), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 171/570 (30%), Positives = 295/570 (51%), Gaps = 18/570 (3%) Query: 160 YRKMIVEVLLLSLVLQIIGLVTPMFFQVVMDKVLVNNAMTTLNVIAIGLLAATVFEAVLT 219 Y+K + + +V V P FQV++DK V +L ++ + ++ + T Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Query: 220 AIRTAVFARTSSKIDVELGARLFKHLLSLPISYFQARRAGDSIA----RIRELENIRTFL 275 + + S++I EL ++F +L LP+ ++ G I ++++ ++ T + Sbjct: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 Query: 276 TSNAMTLVLDLIFSFIFIAVMFWYSVPLSLIVLASIPIYLLLSLIFTPILRARLNEKFNK 335 ++ + L ++ ++ + W L+++ L +P+ L+ L+ + Sbjct: 136 FTSILRSALTVLGLLAWLLYLNWV---LTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAV 192 Query: 336 GAENQAFLVETLTGMDTVKAMAVEPRWQQKWDQQLAAYVAAGLTTTNIGLVASGSVGL-I 394 AE + ET +K + +++++++ A L + + + A+ S + I Sbjct: 193 NAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRR-----AENLRSYTMRMTAAFSSTVPI 247 Query: 395 SKLVT---VGIMWLGAKLVVEN-QLSVGELVAFNMLAGQVSSPILRLAQLWNDFQQVGIS 450 ++L+T V ++ + A + N Q++VG V+F + +P+ +LA++ Q+ + Sbjct: 248 TQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAA 307 Query: 451 MSRLGDVLDARSEVAGQKTRIPKLAGAISFHQVCFRYRPDAQDVIRDVSLQVKPGEVIGI 510 + ++D +E + + G + F +V F Y Q +++++L V+ GE I Sbjct: 308 AEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAF 367 Query: 511 VGRSGSGKSTLTKLVQRLYVCDRGRVSVDGQDIAVIDTASLRQQIGVVLQENVLFSRSIR 570 VG SG GKSTL L+ Y C G + +DG+DI I SLRQQI +V Q VLF ++ Sbjct: 368 VGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLA 427 Query: 571 DNIALADPSLPIETIIAAARLAGAHDFICELPEGYDTLVGEHGSGLSGGQRQRIAIARAL 630 NIA D + + AA A D + LPEG T +G++GS LSGGQRQR+AIARA+ Sbjct: 428 ANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAI 487 Query: 631 IGNPGILIFDEATSALDYESERVIQDNMRKICAGRTVLIIAHRLSAVRDAHRIIVMERGQ 690 + ILI DEATSALD ESER +Q + ++ GRT +IAHRLS + A RI+V+ GQ Sbjct: 488 YKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQ 547 Query: 691 IAESGRHEELLKIPNGIYAHLFQLQGDPQS 720 IAE G H+ LL+ G+YA+L++LQ Q+ Sbjct: 548 IAEIGTHQALLE-QEGVYANLYRLQFSQQA 576 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,077,196 Number of extensions: 85625 Number of successful extensions: 773 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 616 Number of HSP's successfully gapped: 131 Length of query: 730 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 638 Effective length of database: 1,184,250 Effective search space: 755551500 Effective search space used: 755551500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 134 (56.2 bits)