BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2850.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   477   e-136
gi|300310691|ref|YP_003774783.1| outer membrane drug efflux lipo...    57   3e-09

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  477 bits (1228), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/449 (56%), Positives = 337/449 (75%), Gaps = 7/449 (1%)

Query: 37  DPLLSRPPELDHGKILPGDRSTYACSPSQPAAGMVLPLAQAVDWALCHNAQVQMAWANIK 96
           DPLL+RPP+L  G++LPGD     C+ S   AG  L LA A+D ALC   Q+Q AWA IK
Sbjct: 37  DPLLARPPDLITGRLLPGDDQRVECAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIK 96

Query: 97  IQAAQVGEARAAYLPTLSAGVNQSSTHAEYADNAFQVNRRQSNRSHYYTLTWRLLDAGAR 156
           +QAAQ+GEARA YLPT+++G ++ ++  +Y   +     R+S  + Y TLTWRLLD G R
Sbjct: 97  LQAAQLGEARAGYLPTVTSGASKLNSATQYEGGSG----RRSLTTLYATLTWRLLDFGGR 152

Query: 157 SAKRRAADALLDAASASHDAAIQRLLTSVISLYFEAQTASANLVARQRGESLARETLAVA 216
           SA +RAADA+L +A ASHDAA+Q+ L SV++ Y+E Q++SA+  AR++ + LAR+ L  A
Sbjct: 153 SANQRAADAMLQSALASHDAAVQKALASVVASYYEVQSSSASQQAREKSQQLARQLLETA 212

Query: 217 RRREARGLGAKTDTLQAQTSLAKAELERARAMGQYKKALTALMVVIGL--QAQDVPGMAL 274
            RRE RG+G+  +TLQA+T LAKAELE+ARA GQ+KKA   L   +GL  +AQDVP + L
Sbjct: 213 IRREQRGVGSLPETLQARTFLAKAELEQARASGQHKKAQAMLAAAMGLLREAQDVPVLTL 272

Query: 275 AADMEDEQSTLEQDLADWLEAARQQHPAILAARSRLEAARNKLEATRADGLPTVDLSASR 334
             + E+    LEQ+L  WL+AARQ HPAILAAR++LEAAR KL+  R++G+PT+DLSA +
Sbjct: 273 VPEQEEYPDGLEQNLPAWLQAARQYHPAILAARAQLEAAREKLQVARSEGMPTLDLSARQ 332

Query: 335 YFNGRPNQAGTLTQGRETVVGVSLNIPLFDGFSHTYKVRGAQGQIELKEAELRETQSQIL 394
           Y NGRPNQAG     RE +VG++L +P+F+GF+  YKV GAQ QIE +EAEL+E Q+Q+L
Sbjct: 333 YANGRPNQAGNRGD-RERMVGLNLTVPIFEGFARDYKVGGAQAQIEAREAELQEVQTQVL 391

Query: 395 GDIAVAHAEATAALASLVSSQALLDAARHALENVQRRYDRGIADIVEMLNVQAALADAEQ 454
           GDIA  +AEA  AL SL SS+ LLDAA+ A+++V+R+YD G ADIVEMLN Q AL++A+Q
Sbjct: 392 GDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEMLNAQTALSEADQ 451

Query: 455 ERVRSLADWRSARLRLLASAGTLGRSAIA 483
           ERV++++DWRSARLRLLA+AG +GR A+A
Sbjct: 452 ERVKAMSDWRSARLRLLANAGRMGRWAVA 480


>gi|300310691|ref|YP_003774783.1| outer membrane drug efflux
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 176/411 (42%), Gaps = 39/411 (9%)

Query: 74  LAQAVDWALCHNAQVQMAWANIKIQAAQVGEARAAYLPTLSAGVNQSSTHAEYADNAFQV 133
           L Q +  AL +N  +++A  NI+   AQ G  RAA  P++ A    S T +    +    
Sbjct: 75  LQQVIALALENNRDLRVAVLNIEKARAQYGVQRAALFPSIKAAT--SETASRTPGDLSST 132

Query: 134 NRRQSNRSHYYTLTWRL----LDAGARSAKRRAADALLDAASASHDAAIQRLLTSVISLY 189
               ++RS+  TL +      L    RS K +A  + L  A A          ++ ISL 
Sbjct: 133 GSALTSRSYTATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARR--------STQISLI 184

Query: 190 FEAQTASANLVARQRGESLARETL-------AVARRREARGLGAKTDTLQAQTSLAKAEL 242
            E  TA   L + Q    LA++TL       A+ +R    G  +     QAQTS+  A +
Sbjct: 185 AEVATAWLTLASDQDRLRLAQDTLESQSSSYALTQRSFELGSSSALTLRQAQTSVESARV 244

Query: 243 ERARAMGQYKKALTALMVVIGLQAQDVPGMALAADMEDEQ-------STLEQDL-ADWLE 294
           +      Q  +   AL++++G   +D+P   L   + D +       +T+   L +D L 
Sbjct: 245 DVESYTAQVDQDRNALVLLVG---KDLPTALLPQGLPDTRLAAASPLATIPPGLPSDLL- 300

Query: 295 AARQQHPAILAARSRLEAARNKLEATRADGLPTVDLSASRYFNGRPNQAGTLTQGRETVV 354
              Q+   I+ A   L AA   + A RA   P++ L+ +         AG    G  +  
Sbjct: 301 ---QRRADIVQAERDLRAANANIGAARAAFYPSITLTVNAG-TASARLAGLFKGGSGSWS 356

Query: 355 GV-SLNIPLFDGFSHTYKVRGAQGQIELKEAELRETQSQILGDIAVAHAEATAALASLVS 413
            V  +++P+FDG ++   +  A    ++  A+  +       +++ A A+       L +
Sbjct: 357 FVPQISLPIFDGGANQANLDIATVSRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLQA 416

Query: 414 SQALLDAARHALENVQRRYDRGIADIVEMLNVQAALADAEQERVRS-LADW 463
            +AL+ A+  A    Q RY  G+   + +L+ Q  L  A++  + + L+ W
Sbjct: 417 QEALVQASDEAFRLSQARYHSGVDSYLTVLDSQRTLYSAQKNLIGTQLSRW 467


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,290,768
Number of extensions: 48587
Number of successful extensions: 320
Number of sequences better than 1.0e-08: 12
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 12
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)