BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2843.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310581|ref|YP_003774673.1| glycosyltransferase [Herbaspiri...    67   3e-12

>gi|300310581|ref|YP_003774673.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 129/307 (42%), Gaps = 68/307 (22%)

Query: 10  GGVVHALQ-LAEGLQALGHETTLLAPDAAGKGLFRRAACHFHPVPGALHSADIADMVRLR 68
            GVV+ L+     L+ALGHE  LL+P       FR  AC  +P             +RL 
Sbjct: 15  NGVVNTLRSTVRCLRALGHEVLLLSPRD-----FRTFACPTYP------------EIRLA 57

Query: 69  IEDYLRCFAQPGMTDFDLYHAQDSISANALATLTERGM-IAGYVRTVHHLDQFEDSRLHR 127
            + Y R           +  A +S   + +   TE  M +A     +     F  +   R
Sbjct: 58  YQPYAR-----------IASALESFQPDCIHIATEGPMGLAARRYCLRRKLSFTTAYHTR 106

Query: 128 WQERGYRAADRVLCVSRTWQEILRREHG------VQAELVSNGVDTQRYTP--------Q 173
           + E  Y AA ++L  + T++ +LR  HG      V    +   ++ Q +           
Sbjct: 107 FPE--YLAARKLLPKALTYR-LLRWFHGRSEAIMVPTPAMKTALEEQGFNKVVLWGRGVD 163

Query: 174 ASHRDAALRAQLGLDGTPLLLAVGGVEPRKNTLGILRAFVRLRRVYPQAQLVIAGGASVL 233
            +H   A+     +D  PL L VG V   KN    + AF++L    P  + V+  G  + 
Sbjct: 164 TTHFRPAVEDHACID-RPLFLYVGRVAVEKN----IEAFLKLD--LPGTKWVVGDGPQL- 215

Query: 234 DHAAYQQQFQREWQAAGLPAGALRILGQVADADMPALFRCADALVFPSLKEGFGLVVLEA 293
                ++  QR  +        +R LG     ++PA + CAD  VFPS  + FGLV+LEA
Sbjct: 216 -----EELTQRYPE--------VRFLGAKGQDELPAYYNCADVFVFPSKTDTFGLVLLEA 262

Query: 294 MASGVPV 300
           MA GVPV
Sbjct: 263 MACGVPV 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,260,017
Number of extensions: 53007
Number of successful extensions: 269
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 3
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)