BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2836.p (400 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 754 0.0 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 310 2e-85 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 225 4e-60 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 215 7e-57 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 175 5e-45 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/400 (93%), Positives = 388/400 (97%) Query: 1 MSADPVVIVSAARTVMGSFQGALADLPAPQLGALAIAAALQRARLSAQQIAQIEQVWMGC 60 MS DPVVIVSAART MGSFQGALADLPAP LGA+AI+AALQRA+LSA QIAQIEQVWMGC Sbjct: 1 MSEDPVVIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGC 60 Query: 61 VLQAGLGQSPARQAALRAGLPQSVACATLNKVCGSAMQAVMLAHDSILAGSASLVVAGGM 120 VLQAGLGQ+PARQAALRAGLPQ+VACATLNKVCGSAMQAVML HDSILAGSAS+VVAGGM Sbjct: 61 VLQAGLGQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGM 120 Query: 121 ESMSNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASDFGFT 180 ESMSNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCAS+FGFT Sbjct: 121 ESMSNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFT 180 Query: 181 RDQQDAYAVQSTLRARQAISSGGFDWEVVPVEVAGKKGSVVIAEDEGPMAVNLERIATLK 240 R QQDA+AVQSTLRARQAIS GGFDWEVVPV+VAGKKGSVVI++DEGPMAVNLERIATLK Sbjct: 181 RAQQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGSVVISQDEGPMAVNLERIATLK 240 Query: 241 PAFRGDGTVTAANSSSISDGAAALVLMRESEALRQGLTPLARILGHASYAGAPEKFPTAP 300 PAF DGTVTAANSSSISDGAAAL+LMRES AL+QGLTPLARILGHASYAGAPEKFPTAP Sbjct: 241 PAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAP 300 Query: 301 IGVLRKIFAKTGLDAVSTDLFEINEAFAVVPMAASRELNIDMEKINVHGGACALGHPIGA 360 IGVLRKIFAKTGLDA STDLFEINEAFAVVPMAASREL+IDMEKINVHGGACALGHPIGA Sbjct: 301 IGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDIDMEKINVHGGACALGHPIGA 360 Query: 361 SGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALALS 400 SGARIIVSLLGALKARGLKTGIASLCIGGGEATAIAL LS Sbjct: 361 SGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALELS 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 310 bits (793), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/395 (45%), Positives = 244/395 (61%), Gaps = 8/395 (2%) Query: 4 DPVVIVSAARTVMGSFQGALADLPAPQLGALAIAAALQRARLSAQQIAQIEQVWMGCVLQ 63 D VVIV+A RT +G F GAL+ + A LGA I A L + + + I++ V +G VL Sbjct: 2 DDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISE---VILGQVLT 58 Query: 64 AGLGQSPARQAALRAGLPQSVACATLNKVCGSAMQAVMLAHDSILAGSASLVVAGGMESM 123 AGLGQ+PARQ+ +++GLP V + KVCGS ++AV LA +I G A +V+AGG E+M Sbjct: 59 AGLGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENM 118 Query: 124 SNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASDFGFTRDQ 183 S +P++L +R G+R+G +L D M +DGL D Y +QY MG AE+ A F +R++ Sbjct: 119 SASPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVY-NQYH---MGITAENVAKKFEISREE 174 Query: 184 QDAYAVQSTLRARQAISSGGFDWEVVPVEVAGKKGSVVIAEDEG-PMAVNLERIATLKPA 242 QDA+A S +A A +G F E+VP+E+ GKK +VV DE V E +ATL+PA Sbjct: 175 QDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRPA 234 Query: 243 FRGDGTVTAANSSSISDGAAALVLMRESEALRQGLTPLARILGHASYAGAPEKFPTAPIG 302 F GTVTA N+S I+DGAAA+V+ A GL LA+I ++S P P+ Sbjct: 235 FDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVP 294 Query: 303 VLRKIFAKTGLDAVSTDLFEINEAFAVVPMAASRELNIDMEKINVHGGACALGHPIGASG 362 + K G DL EINEAFA +A ++++ D KINV+GGA ALGHPIGASG Sbjct: 295 ASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASG 354 Query: 363 ARIIVSLLGALKARGLKTGIASLCIGGGEATAIAL 397 R++V+LL + R K G+ASLCIGGG A+A+ Sbjct: 355 CRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAV 389 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 225 bits (574), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 146/399 (36%), Positives = 223/399 (55%), Gaps = 12/399 (3%) Query: 6 VVIVSAARTVMGSFQGALADLPAPQLGALAIAAALQRARLSAQQIAQIEQVWMGCVLQAG 65 V I A RT +G + GAL D+ A LGA+ + A ++R ++ V GC QAG Sbjct: 4 VFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERN--PQVDWKAVDDVIYGCANQAG 61 Query: 66 L-GQSPARQAALRAGLPQSVACATLNKVCGSAMQAVMLAHDSILAGSASLVVAGGMESMS 124 ++ AR + L AGLPQ V +T+N++CGS M A+ A +I +G L++AGG+ESM+ Sbjct: 62 EDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMT 121 Query: 125 NAPYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASDFGFTR 181 AP+++ KA + D + F++ L +Y M AE+ A DF +R Sbjct: 122 RAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL---MKQKYGVDAMPETAENVAVDFKVSR 178 Query: 182 DQQDAYAVQSTLRARQAISSGGFDWEVVPVEVAGKKGS-VVIAEDEGPMAVNLERIATLK 240 QD +AV+S +A A ++G E+VPV + KKG + + +DE P A ++E +A LK Sbjct: 179 ADQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLK 238 Query: 241 PAFRGDGTVTAANSSSISDGAAALVLMRESEALRQGLTPLARILGHASYAGAPEKFPTAP 300 + DG+VTA N+S ++DGA AL+L + L P ARILG A+ AP P Sbjct: 239 GVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGP 298 Query: 301 IGVLRKIFAKTGLDAVSTDLFEINEAFAVVPMAASRELNI--DMEKINVHGGACALGHPI 358 +K+ A+ G+ D+ E+NEAFA +A REL + D ++N +GGA ALGHP+ Sbjct: 299 APASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPL 358 Query: 359 GASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIAL 397 G SGAR++ + L+ G + + ++CIG G+ A+ + Sbjct: 359 GMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVI 397 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 215 bits (547), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 147/399 (36%), Positives = 223/399 (55%), Gaps = 13/399 (3%) Query: 7 VIVSAARTVMGSFQGALADLPAPQLGALAIAAALQRARLSAQQIAQIEQVWMGCVLQAGL 66 +I A RT G + GAL + A L A I + ++R +++E + GC QAG Sbjct: 4 LICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERN--PGVDWSRVEDILYGCANQAGE 61 Query: 67 -GQSPARQAALRAGLPQSVACATLNKVCGSAMQAVMLAHDSILAGSASLVVAGGMESMSN 125 ++ AR A L AGLP +V +T+N++CGS++ AV +A +I +G L++AGG+ESM+ Sbjct: 62 DNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 Query: 126 APYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASDFGFTRD 182 AP+++ KA + D + F++ L A QY M AE+ A+DF R Sbjct: 122 APFVMGKAESAFARSAAIFDTTIGWRFVNPLMKA---QYGIDSMPETAENVATDFQINRA 178 Query: 183 QQDAYAVQSTLRARQAISSGGFDWEVVPVEVAGKKGS-VVIAEDEGPMA-VNLERIATLK 240 QDA+A++S R A ++G F E+ P+ + KKG +V+ DE P L +A LK Sbjct: 179 DQDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLK 238 Query: 241 PAFRGDGTVTAANSSSISDGAAALVLMRESEALRQGLTPLARILGHASYAGAPEKFPTAP 300 R DGTVTA N+S ++DGA AL+L A L P AR+LG A+ AP P Sbjct: 239 GVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGP 298 Query: 301 IGVLRKIFAKTGLDAVSTDLFEINEAFAVVPMAASRELNI--DMEKINVHGGACALGHPI 358 +RK+ A+ GL D+ E+NEAFA +A R+L + D +N +GGA A+GHP+ Sbjct: 299 APAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPL 358 Query: 359 GASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIAL 397 GASGAR++ + + L+ G + + ++CIG G+ A+ + Sbjct: 359 GASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVI 397 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 135/397 (34%), Positives = 196/397 (49%), Gaps = 32/397 (8%) Query: 8 IVSAARTVMGSF-QGALADLPAPQLGALAIAAALQRARLSAQQIAQIEQVWMGCVLQAGL 66 IV+A RT +G +G + L AI +A+ A++ IE +GC G Sbjct: 10 IVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAV--AQVPGLDPKLIEDAIVGCSFPEGA 67 Query: 67 -GQSPARQAALRAGLPQSVACATLNKVCGSAMQAVMLAHDSILAGSASLVVAGGMESMSN 125 G + AR A L AGLP ++ T+N+ C S + A+ +A D I G A +++A G ESMS Sbjct: 68 QGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMSM 127 Query: 126 APYLLPKARRGYRLGHDRLLDHMFLD-GLEDAYSDQYRGRLMGTFAEDCASDFGFTRDQQ 184 P + G+ H + + F D + AY MG AE A + +R+ Q Sbjct: 128 VPMM------GF---HPSININAFKDENVGMAYG-------MGLTAEKVAQQWKVSREAQ 171 Query: 185 DAYAVQSTLRARQAISSGGFDWEVVPVEVAGKKGSVVIAE----------DEGPMA-VNL 233 D +++ S +A A +G F E+ E+ + ++ E DEGP A NL Sbjct: 172 DEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNL 231 Query: 234 ERIATLKPAFRGDGTVTAANSSSISDGAAALVLMRESEALRQGLTPLARILGHASYAGAP 293 +A LKP F G+VTA NSS SDGA AL+++ E + LTPLAR + A P Sbjct: 232 AALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPP 291 Query: 294 EKFPTAPIGVLRKIFAKTGLDAVSTDLFEINEAFAVVPMAASRELNIDMEKINVHGGACA 353 E P + GL D E+NEAFA +A +L +D K+N GGA A Sbjct: 292 EIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIA 351 Query: 354 LGHPIGASGARIIVSLLGALKARGLKTGIASLCIGGG 390 LGHP+GA+GA + + AL+ + LK G+ ++C+G G Sbjct: 352 LGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTG 388 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,169,796 Number of extensions: 47679 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 6 Length of query: 400 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 313 Effective length of database: 1,207,925 Effective search space: 378080525 Effective search space used: 378080525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)