BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2833.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310262|ref|YP_003774354.1| aldoxime dehydratase [Herbaspir...   691   0.0  

>gi|300310262|ref|YP_003774354.1| aldoxime dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/349 (93%), Positives = 341/349 (97%)

Query: 1   MESAIDQHLKCPRTLSRRVGDDYQPPFPMWVGRADDSLTQVTMAYLGIQFKEEQRAAALQ 60
           MESAIDQHLKCPRTLSRRV DDYQPPFPMWVGRAD +LTQVTMAYLGIQFKEE+RA ALQ
Sbjct: 1   MESAIDQHLKCPRTLSRRVDDDYQPPFPMWVGRADATLTQVTMAYLGIQFKEEKRAQALQ 60

Query: 61  AMRHIVASFALPDGPGNHDMSYHLDNAGYGNFIVVGYWRDAGRYCRWMRSPEVAGWWDSE 120
           AMRHIV+SFALPDGPGNHDMSYHLDN GYGNFIVVGYWRDAGRYCRWMRSP+VAGWWDS+
Sbjct: 61  AMRHIVSSFALPDGPGNHDMSYHLDNQGYGNFIVVGYWRDAGRYCRWMRSPDVAGWWDSD 120

Query: 121 ARLADGIGYFREVFSPRAEQFETLYAFKEELPGVGAVMDRISDDIEEHGYWGSMRDRIPA 180
           ARLADG+GYFREVFSPRAEQFETLYAFKE+LPGVGAVMDRISDDIEEHGYWGSMRDR PA
Sbjct: 121 ARLADGLGYFREVFSPRAEQFETLYAFKEDLPGVGAVMDRISDDIEEHGYWGSMRDRFPA 180

Query: 181 SQVDRMRPCGQLEVISGDPAKGGRVVIKGHDNIALIRSGQDWVDADPDERALYFNEMLPP 240
           SQVDRMRP GQLEV+SG+PAKGGRV++KGHDNIALIRSGQDWVDADP+ERALYFNEMLPP
Sbjct: 181 SQVDRMRPSGQLEVLSGEPAKGGRVLLKGHDNIALIRSGQDWVDADPEERALYFNEMLPP 240

Query: 241 LQDGMDFLRDQGKEIGCYSNRFVRNVDLDGKLLDIAYDIGHWRSLDLLERWAESHPTHLR 300
           LQDGMDFLRDQGKEIGCYSNRFVRNVDL+G LLDIAYDIGHWRSLDLLERWAESHPTHLR
Sbjct: 241 LQDGMDFLRDQGKEIGCYSNRFVRNVDLEGNLLDIAYDIGHWRSLDLLERWAESHPTHLR 300

Query: 301 IFTTFFKVVTGLKKLRLYHEVSVSDGATQWLEYINCHPTTGMLRDARTS 349
           IFTTFFKVVTGLKKLRLYHEVSVSDGATQWLEYINCHP TGMLRDA+TS
Sbjct: 301 IFTTFFKVVTGLKKLRLYHEVSVSDGATQWLEYINCHPQTGMLRDAKTS 349


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,244,924
Number of extensions: 56398
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)