BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2828.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol dehydr...   590   e-170
gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol dehydr...   349   2e-97

>gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  590 bits (1521), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/303 (95%), Positives = 297/303 (98%)

Query: 1   MNMNQKAGRRFASLRAVLFSIAVALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHA 60
           MNMN K+G RFASLR VLFSIAVALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHA
Sbjct: 1   MNMNLKSGPRFASLRTVLFSIAVALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHA 60

Query: 61  ERDASYTNGNRNPGNPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALGN 120
           ERDASY++GNRNPGNPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALG+
Sbjct: 61  ERDASYSSGNRNPGNPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALGS 120

Query: 121 ENALGDLILAAPVWLINDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLV 180
           ENALGDLILAAPVWL+NDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLV
Sbjct: 121 ENALGDLILAAPVWLVNDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLV 180

Query: 181 QQISGPLYLDLTGDVMVYGKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNASAGLSRT 240
           Q+ISGPLYLDLTGDVMV+GKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNA+AGLSRT
Sbjct: 181 QRISGPLYLDLTGDVMVFGKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNATAGLSRT 240

Query: 241 WGGETTVNGVDSHDQPNQLKISFGGSTFVGPKTQIMGSIGRDLSVDNGFKENFRLNLRLL 300
           WGGET VNGVD+HDQPNQLKISFGGSTFV  KTQIMGSIGRDLSVDNGFKENFRLNLRLL
Sbjct: 241 WGGETRVNGVDNHDQPNQLKISFGGSTFVAAKTQIMGSIGRDLSVDNGFKENFRLNLRLL 300

Query: 301 QIF 303
           QIF
Sbjct: 301 QIF 303


>gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  349 bits (896), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/294 (58%), Positives = 209/294 (71%)

Query: 10  RFASLRAVLFSIAVALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHAERDASYTNG 69
           R  + R +L   A++L +     A AIDVD  D+VPAP GTT GLLY QHAERD+ YT G
Sbjct: 23  RMPAARKMLALAALSLVVMFPVAAHAIDVDIGDFVPAPGGTTVGLLYYQHAERDSLYTKG 82

Query: 70  NRNPGNPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALGNENALGDLIL 129
            +   NP L SD+ I RLVHY +IGG    PQVLLPF  L +GRD   LG  + +GD+IL
Sbjct: 83  QKAALNPRLVSDIGIARLVHYTSIGGLAFAPQVLLPFGRLDAGRDTAPLGQTSGVGDIIL 142

Query: 130 AAPVWLINDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLVQQISGPLYL 189
           AAP W +ND A  T+  +APYLYLPTGSY  +RALN+GE+RWKFDLQ G V+  +   YL
Sbjct: 143 AAPFWPLNDAASRTYLGIAPYLYLPTGSYDRNRALNLGEHRWKFDLQVGFVKGFTEKWYL 202

Query: 190 DLTGDVMVYGKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNASAGLSRTWGGETTVNG 249
           DLTGDVM YGKNNDYGS   + RQ  L+Q Q+YLRYQF+   N   GLS+ WGGET V+G
Sbjct: 203 DLTGDVMFYGKNNDYGSNGATQRQKSLFQGQAYLRYQFTPVANIFVGLSQNWGGETRVDG 262

Query: 250 VDSHDQPNQLKISFGGSTFVGPKTQIMGSIGRDLSVDNGFKENFRLNLRLLQIF 303
           V S+D+  Q K S GGS F+GPKTQ++G+IGRDL V NGFKEN R+NLRLL++F
Sbjct: 263 VASNDEARQRKASIGGSWFIGPKTQLLGAIGRDLYVQNGFKENARINLRLLRVF 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 997,108
Number of extensions: 45071
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)