BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2823.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312118|ref|YP_003776210.1| hypothetical protein Hsero_2809...   209   1e-55

>gi|300312118|ref|YP_003776210.1| hypothetical protein Hsero_2809
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  209 bits (533), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 96/132 (72%), Positives = 115/132 (87%)

Query: 1   MDIATPALQSLRIEMHFDEMPLSSGTGFIARRRNGMYLITNRHNVTGRDQHTGACLSPQS 60
           M++A P+LQS RIEM+F ++ LSSGT FI RR + ++L +N HNVTGRDQH GACLS + 
Sbjct: 1   MNVAPPSLQSSRIEMYFGDILLSSGTSFITRRGSKLFLTSNSHNVTGRDQHAGACLSARE 60

Query: 61  GIPNNVVIRYYKADSPGEFVSYREPLLANDEPLWFEHPELGTTADFVALKVTNAPGAIIH 120
           GIPNNVVIRY KAD+PGEF+SY+EP+LANDEPLWF+HP+LG TADFVALK+TN+PGAIIH
Sbjct: 61  GIPNNVVIRYNKADNPGEFLSYQEPILANDEPLWFKHPKLGKTADFVALKLTNSPGAIIH 120

Query: 121 PIDPASVGVPIK 132
           PIDP SVGVP K
Sbjct: 121 PIDPVSVGVPTK 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,271
Number of extensions: 44750
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)