BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2818.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312116|ref|YP_003776208.1| mrr restriction system protein ...  1016   0.0  
gi|300310547|ref|YP_003774639.1| 5-methylcytosine-specific restr...    59   1e-09

>gi|300312116|ref|YP_003776208.1| mrr restriction system protein
           [Herbaspirillum seropedicae SmR1]
          Length = 535

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/534 (97%), Positives = 523/534 (97%)

Query: 1   MGRRSGIEGFLRAAARAAAAAERESQRALRAQATQLRQLERQQRMAAAQEARDQKAAEKM 60
           MGRRSGIEGFLRAAAR AAA ERESQRALR QATQLRQLERQQRMAAAQEARDQKAAEKM
Sbjct: 1   MGRRSGIEGFLRAAARGAAAVERESQRALRTQATQLRQLERQQRMAAAQEARDQKAAEKM 60

Query: 61  AKLQYLEDRQGEVDDLNAELQDRLDELKGLLAHTLHHDDRIDFASLKSSERYAPFSPPRE 120
           AKLQYLE+RQGEVDDLNAELQDRLDELKGLLAHTLHHDDRIDFASLKSSERYAPF PPRE
Sbjct: 61  AKLQYLEERQGEVDDLNAELQDRLDELKGLLAHTLHHDDRIDFASLKSSERYAPFRPPRE 120

Query: 121 LLSESPPLPTEVAPLKGLSRFWPGSVNRHAEDVAKASEAHKRALAAYEHTESQKLAKLSK 180
           LLSESPPLP EVAPLKGLSRFWPGSVNRHAEDVAKASEAHKRALAA+EHTESQKLAKLSK
Sbjct: 121 LLSESPPLPKEVAPLKGLSRFWPGSVNRHAEDVAKASEAHKRALAAHEHTESQKLAKLSK 180

Query: 181 IKREYEEKKEAYERDVLAHNAEVDRIQATYQSKDPEAIVAYCDMVLARSAYPAEGFPQKF 240
           IKREYEEKKEAYERDVLAHNAEV+RIQA Y S+D EAIVAYCDMVLARSAYPAEGFPQKF
Sbjct: 181 IKREYEEKKEAYERDVLAHNAEVERIQAAYHSQDAEAIVAYCDMVLARSAYPAEGFPQKF 240

Query: 241 RLAFQQETGELVVEYDLPEPSVIPQDAEFRYVKTKDQIESKARKPAEIKQLYQDIVAAVT 300
           RLAFQQETGELVVEYDLPEPSVIPQ+AEFRYVKTKDQIE KARKPAE KQLYQDIVAAVT
Sbjct: 241 RLAFQQETGELVVEYDLPEPSVIPQEAEFRYVKTKDQIEFKARKPAETKQLYQDIVAAVT 300

Query: 301 LRTLHELFEADQVNALSRITFNGMIDTHDPASGKEVRVPVVSVRAPKETFLELRLEKVDK 360
           LRTLHELFEADQVNALSRITFNGMIDTHDPASGKEVRVPVVSVRAPKETFLELRLEKVDK
Sbjct: 301 LRTLHELFEADQVNALSRITFNGMIDTHDPASGKEVRVPVVSVRAPKETFLELRLEKVDK 360

Query: 361 IACLKNLGAQVSPRPDELLAIKPIVEFDMIDKRFIDQGDVLTGLESRPNLLDLTPGEFEI 420
           IACLKNLGAQVSPRPDELLAIKPIVEFDMIDKRFIDQGDVLT LESRPNLLDLTPGEFEI
Sbjct: 361 IACLKNLGAQVSPRPDELLAIKPIVEFDMIDKRFIDQGDVLTVLESRPNLLDLTPGEFEI 420

Query: 421 LVSNLFGKMGLETKLTRSSRDGGVDAVAYDTRPILGGKVVIQAKRYKDTVGVSAVRDLFG 480
           LVSNLFGKMGLETKLTRSSRDGGVDAVAYDTRPILGGKVVIQAKRYKDTVGVSAVRDLFG
Sbjct: 421 LVSNLFGKMGLETKLTRSSRDGGVDAVAYDTRPILGGKVVIQAKRYKDTVGVSAVRDLFG 480

Query: 481 TMMNEGANKGILVCTSGYGTDAYNFCKDKPIELIDGGGLLYLLREHAGIEARIA 534
           TMMNEGANKGILVCTSGYGTDAYNFCKDKPIELIDGGGLLYLLREHAGIEARIA
Sbjct: 481 TMMNEGANKGILVCTSGYGTDAYNFCKDKPIELIDGGGLLYLLREHAGIEARIA 534


>gi|300310547|ref|YP_003774639.1| 5-methylcytosine-specific
           restriction endonuclease [Herbaspirillum seropedicae
           SmR1]
          Length = 306

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 11/123 (8%)

Query: 413 LTPGEFEILVSNLFGKMGL------ETKLTRSSRDGGVDAVAYDTRPILGGKVV-IQAKR 465
           ++P  FE LV +L   MG              S DGG+D +  + R  LG  V+ +QAKR
Sbjct: 163 MSPAFFERLVIDLLVSMGYGGSRQDAASAVGKSGDGGIDGIIKEDR--LGLDVIYVQAKR 220

Query: 466 YKDTVGVSAVRDLFGTMMNEGANKGILVCTSGYGTDA--YNFCKDKPIELIDGGGLLYLL 523
           ++ TVG   ++   G +  + ANKG+ + TS + ++A  Y       I L+DG  L  L+
Sbjct: 221 WEGTVGRPEIQKFAGALQGQRANKGVFITTSSFSSEAEEYTNIISSKIILLDGRQLAKLM 280

Query: 524 REH 526
            +H
Sbjct: 281 VDH 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,382,490
Number of extensions: 53606
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)