BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2805.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799...   477   e-136

>gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  477 bits (1228), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/286 (83%), Positives = 256/286 (89%)

Query: 1   MAHPDLDLTLLRQWLGKTETRQDQISPALAAALAATLDGPRQPGAGASLPPLWHWIYFWN 60
           MA PDLDLTLLRQWL K+ETR D + PA+A+ALAATLDGPRQP AG  LPPLWHWIYFWN
Sbjct: 1   MASPDLDLTLLRQWLDKSETRHDHLHPAMASALAATLDGPRQPLAGEGLPPLWHWIYFWN 60

Query: 61  VCRQSEVGADGHPQRGGFLPPVPLPRRMWAGGRLRFEAPLPIGVEAEKISRIASVDVKQG 120
            CRQSE G DGHP RGGFLPPVPLPRRMWAGGRLRF APLPIG+EA K SR+AS+DVKQG
Sbjct: 61  ACRQSETGPDGHPLRGGFLPPVPLPRRMWAGGRLRFMAPLPIGMEASKHSRVASIDVKQG 120

Query: 121 HTGALAFVTVHHTIRHQGQVCLTEEHDIVYRDLPPPSAVPVPPKAAPTGAQWSRRVLPDP 180
            +GALAFVTVHHTI H GQ CLTEEHDIVYRDLP   A PVP KAAPT A WSRR++PDP
Sbjct: 121 RSGALAFVTVHHTISHAGQTCLTEEHDIVYRDLPQAGAAPVPAKAAPTDALWSRRIVPDP 180

Query: 181 VLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLAREMPQAVLREFN 240
           VLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLAR+MPQAVLR F+
Sbjct: 181 VLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLARQMPQAVLRAFD 240

Query: 241 FRAVGSLFDIDAFTLCGQPAADGRSVALWAQNERGELAMQAEAILD 286
           FRAVGSLFD +AFTLCG+P+ADGR VALWAQNERGELAMQAEA L+
Sbjct: 241 FRAVGSLFDTEAFTLCGKPSADGRRVALWAQNERGELAMQAEATLE 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 977,815
Number of extensions: 41482
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)