BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2802.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...   409   e-115

>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/272 (79%), Positives = 237/272 (87%), Gaps = 3/272 (1%)

Query: 9   IASSYLFVPANRPERYAKALQSGADAVIVDLEDAVAPSQKEAARAMLAHWL---QEQAAQ 65
           IASSYLFVPANRPERYAKAL SGADAVIVDLEDAVA   KEAAR  LA WL   + QA+Q
Sbjct: 2   IASSYLFVPANRPERYAKALDSGADAVIVDLEDAVARPYKEAARETLARWLAGPEGQASQ 61

Query: 66  PRIWVRINAADTVWHQQDLLTFSAPSLAGIVLPKAEDAATVASVAAHLGAGCRLIALIES 125
            R+WVRINAADTVWH+QDLLTFSA  +AGIVLPKAEDAA V +VA  L +G  LIALIES
Sbjct: 62  ARLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIES 121

Query: 126 AAGLAAMRQIAAVPGVQRLAFGSIDAQLDLRMQCGPQEEELMPLRVEMVMASRLAGIAPP 185
           AAGLAAMRQIAA PGVQRLAFGSIDAQLDL MQCGP+EEEL+ LRVEMV+ASRLAGIA P
Sbjct: 122 AAGLAAMRQIAAAPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAAP 181

Query: 186 IDGVTTDFNDDALLARMVQQARRLGFGAKLCIHPRQVDGVRHGFMPSEQELAWAEEVMAA 245
           +DGVT  F+D+ALL R V++ARRLGFGAKLCIHPRQV+ VR GF+PSEQELAWA EVMAA
Sbjct: 182 VDGVTAGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAA 241

Query: 246 VRASDGGAISFKGKMIDKPVILQAEQFLRVAG 277
           VRASDGGAIS KG+MID+P+ILQAE+FLR  G
Sbjct: 242 VRASDGGAISLKGRMIDRPLILQAEKFLRQVG 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 856,217
Number of extensions: 32897
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)