BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2798.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...   531   e-152
gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phospha...    71   1e-13

>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  531 bits (1367), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/307 (85%), Positives = 279/307 (90%)

Query: 39  VSTLPLIFIDGDQGTTGLQIHERLRGRTDLRVLTLPPAERKDARRRAEAINSADIALLCL 98
           +STLPLIFIDGDQGTTGLQIHERLR R DLRVLTLP AERKDA+RRAEAINSADIALLCL
Sbjct: 1   MSTLPLIFIDGDQGTTGLQIHERLRARQDLRVLTLPAAERKDAQRRAEAINSADIALLCL 60

Query: 99  PDAAAREAVALIENTKVRVIDASSAHRTSPGWVYGFPEMAPGQAEAIASAQRISNPGCYP 158
           PDAAAREAVA+I N +VRVIDASSAHRTSP WVYGFPEMA GQAEAIA+A R+SNPGCYP
Sbjct: 61  PDAAAREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMAAGQAEAIATALRVSNPGCYP 120

Query: 159 TGAIALLRPLVQAGLVPTDYALAIHAVSGYSGGGRAQVEQYEGPQAASAAPFVTYGLGLA 218
           TGAIALLRPLVQAGLVP DY L IHAVSGYSGGGRAQVEQYEG +AA AAPFVTYGLGL 
Sbjct: 121 TGAIALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQ 180

Query: 219 HKHPPEMQLHAGLSQRPIFVPSYGAFGQGIVLSIALHQRLLPAKASLERLRAALQAHYAG 278
           HKHPPEMQLHAGLSQRP+FVPSYGAF QGIVL+IAL  RLLPA+ASLERLRA LQAHY G
Sbjct: 181 HKHPPEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQAHYDG 240

Query: 279 ARHVHVLDAEQSAATAQLDPTRHNGSNDMTLGVFGNATEGHILLCAVFDNLGKGASGAAV 338
           A +V VLDA QS +T QLDPTRHN SN M+LGVFG+A  GHILLCAVFDNLGKGASGAAV
Sbjct: 241 AHYVTVLDAAQSESTTQLDPTRHNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAV 300

Query: 339 QNLDLLL 345
           QNLDL+L
Sbjct: 301 QNLDLML 307


>gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 130/314 (41%), Gaps = 50/314 (15%)

Query: 57  QIHERLRGRTDLRVLTLPPAERKDARRRAEAINSADIALLCLPDAAAREAVALIENTKVR 116
           +++  LRGR D+   + P   R         +   D+     P   A      +    V+
Sbjct: 44  EMYPSLRGRVDV-AFSSPDKAR---------LTDCDVVFFATPHGVAMAQAPELVAAGVK 93

Query: 117 VIDASSAHRTS-----PGW--------------VYGFPEMAPGQAEAIASAQRISNPGCY 157
           VID ++  R         W               YG PE+     EAI  A+ + NPGCY
Sbjct: 94  VIDLAADFRMQDVAAFEKWYKLPHSCTDLLKEAAYGLPEL---NREAIRKARVVGNPGCY 150

Query: 158 PTGAIALLRPLVQAGLVPTDYALAIHAVSGYSGGGRAQVEQYEGPQAASAAPFVTYGLGL 217
           PT       PL++AG++   + +A    SG SG GR         +A+    F  YG+  
Sbjct: 151 PTTMQLGYAPLLKAGVIDASHLIA-DCKSGVSGAGRKAELSLLFSEASDN--FKAYGVS- 206

Query: 218 AHKHPPE-MQLHAGLSQRPI---FVPSYGAFGQGIVLSIALHQRLLPAKASLERLRAALQ 273
            H+H PE ++  + L+   +   F P      +G      +H  L  A+ + E   AALQ
Sbjct: 207 GHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG------MHSTLY-ARLTKEIDNAALQ 259

Query: 274 AHYAGA-RHVHVLDAEQSAATAQLDPTRHNGSNDMTLGVFGNATEGHILLCAVFDNLGKG 332
           A +  A +    +D     A  +   TR   SN + L V        +++  V DNL KG
Sbjct: 260 ALFEDAYKDEPFVDVLPFGAHPETRTTR--ASNMLRLAVHRPGDGDTVVVLVVQDNLVKG 317

Query: 333 ASGAAVQNLDLLLG 346
           ASG AVQ ++L+ G
Sbjct: 318 ASGQAVQCMNLMFG 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,158,431
Number of extensions: 51329
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)