BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2787.p
         (564 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312092|ref|YP_003776184.1| single-stranded-DNA-specific ex...  1084   0.0  

>gi|300312092|ref|YP_003776184.1| single-stranded-DNA-specific
           exonuclease [Herbaspirillum seropedicae SmR1]
          Length = 564

 Score = 1084 bits (2804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/564 (96%), Positives = 551/564 (97%)

Query: 1   MIRVTTRPYDIGQAEQLIAEGVHPVLARVYAARGLSTARELASELNALFAPSGLLHIEAA 60
           MIRV TR YD+ QAEQLI EGVHPVLARVYAARGLS+ARELASELNAL APSGLLHI+AA
Sbjct: 1   MIRVATRTYDLVQAEQLINEGVHPVLARVYAARGLSSARELASELNALIAPSGLLHIDAA 60

Query: 61  ASYLADAIAANKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120
           ASYLADAIAA KKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI
Sbjct: 61  ASYLADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120

Query: 121 VELTVREKQPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDTLPQARVIVNPNQP 180
           VELTVREK PDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGD LPQARVIVNPNQP
Sbjct: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQP 180

Query: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240
           QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA
Sbjct: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240

Query: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300
           NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL
Sbjct: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300

Query: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW 360
           GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW
Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW 360

Query: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420
           HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK
Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420

Query: 421 FGGHAMAAGLTIHAEAFDAFSQAFEAVGRDWLTQNQLERVIETDGALEDAYYSVEFIGLM 480
           FGGHAMAAGLTIHAEAFDAFS AFEAVGRDWLTQNQLERVIETDG LEDAYYSVEFI LM
Sbjct: 421 FGGHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLM 480

Query: 481 DQQVWGQGFAPPVFCDHFRVLNQRILKDKHLKLQLEKGGRKYDAIWFGHTDALPDHAQVA 540
           DQQVWGQGFAPPVFCDHFRVLNQRILK+KHLKLQLEK GR+YDAIWFGHTD+LP+ A+VA
Sbjct: 481 DQQVWGQGFAPPVFCDHFRVLNQRILKEKHLKLQLEKDGRRYDAIWFGHTDSLPELAKVA 540

Query: 541 FRLDANEYNGKTTVQLMVEHAEPA 564
           FRLDANEYNG+TTVQLMVEHAEPA
Sbjct: 541 FRLDANEYNGRTTVQLMVEHAEPA 564


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,795,621
Number of extensions: 77367
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,193,720
Effective search space: 565823280
Effective search space used: 565823280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)