BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2786.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312091|ref|YP_003776183.1| signal peptide protein [Herbasp...   551   e-158

>gi|300312091|ref|YP_003776183.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  551 bits (1420), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/343 (84%), Positives = 309/343 (90%)

Query: 1   MNQLDILIPFALPPAELARDLLRQSHAPALAMLLGRGKAAPRLAHDPFSRALPHEHWLAQ 60
           MNQLD+LIPFALPPAELARDLLRQ  APALAMLLGRG+AAPR +HDPFSRALPHEHWLAQ
Sbjct: 1   MNQLDLLIPFALPPAELARDLLRQCQAPALAMLLGRGRAAPRQSHDPFSRALPHEHWLAQ 60

Query: 61  RFGLPPGAQDSSPAAASALMQSLGHAPQTGHWFVLHPAHIHVARDHLVLTDIGQLQLQEE 120
           RFGLP  AQD SPAAA+ALMQ LGHAP  GHWFVLHPAHIHVARDHLVLTDIGQLQL+E 
Sbjct: 61  RFGLPATAQDCSPAAATALMQRLGHAPDGGHWFVLHPAHIHVARDHLVLTDIGQLQLEEA 120

Query: 121 ESRRLFAAALPLFTEIGHELVYGDERTWFIRADAWAGLRTSTPSAASGRNIDIWMPEGPG 180
           ESRRLF AALPLFTEIGH LVYGD RTWFIRADAWAGLRTSTPSAASGRN+DIWMPEGPG
Sbjct: 121 ESRRLFDAALPLFTEIGHALVYGDARTWFIRADAWAGLRTSTPSAASGRNVDIWMPEGPG 180

Query: 181 ELAWRKLQNEVQMQWFAESLNEQREMRGQKAINSIWIWGGANAGISAQAHYTQSFGLRGW 240
           ELAWRKLQNEVQMQWFAE+LNEQREMRGQKAINSIWIWGGA+AG+ AQ  Y  SFGLRGW
Sbjct: 181 ELAWRKLQNEVQMQWFAEALNEQREMRGQKAINSIWIWGGADAGVLAQQRYAASFGLRGW 240

Query: 241 LRAFGADSGQTGAAEVAKGNGQRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS 300
           +RAFG +   +   ++ + +G RLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS
Sbjct: 241 MRAFGDEHPASDPTQLGQSSGHRLLVLDALAEAALAEEWGLWLQHLEHLDRDWLAPLLVS 300

Query: 301 LRTGTLASLKLVLTGADRSVEVAVTRAALRRFWRKPSLSGLSA 343
           LR GTL +L LVLTGADRS+ V VTR ALRRFWRKPSL+GLSA
Sbjct: 301 LRAGTLEALHLVLTGADRSIAVDVTRGALRRFWRKPSLAGLSA 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,153,264
Number of extensions: 49557
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)