BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2783.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 440 e-125 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 194 4e-51 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 175 3e-45 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 138 4e-34 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 136 1e-33 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 440 bits (1132), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/229 (94%), Positives = 223/229 (97%) Query: 1 MNDPIKNRQAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHL 60 MNDP+KNRQAVL++RGLGKTFTQGKYSVKVL NVDIDVYHGEQVAIVGASGSGKSTLLHL Sbjct: 1 MNDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHL 60 Query: 61 LGGLDTPSTGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI 120 LGGLDTPS+GTVSLLGKDFA LGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI Sbjct: 61 LGGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI 120 Query: 121 RRVKRDQAQEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTG 180 RRVKR AQEQAREML KVGLAQRV+HVPGELSGGERQRVALARALVT PACVLADEPTG Sbjct: 121 RRVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPACVLADEPTG 180 Query: 181 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSDQGL 229 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGR+LRLS+QGL Sbjct: 181 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGL 229 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 105/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 28 VKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSLLGKDFAGLGESER 87 + +L +D V G +AIVGASGSGKSTLL LL GLDTPS G+V L G+D L E R Sbjct: 34 LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 Query: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQAREMLEKVGLAQRVSH 147 LR + LGFV+Q LL +AL+NV +PL +R R A+E+A EML +VGL R+ H Sbjct: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDAR--AREKATEMLGRVGLGSRLKH 151 Query: 148 VPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 P LSGGE+QRVALARA VT+P +LADEPTG+LD +T + ELM EL+R G+ V+ Sbjct: 152 SPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 211 Query: 208 VTHDIELAGRCGRILRLS 225 VTHD +A RC R + ++ Sbjct: 212 VTHDNAMAARCQRTITIA 229 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 175 bits (444), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 146/228 (64%), Gaps = 2/228 (0%) Query: 8 RQAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTP 67 R +L RGL + F G + VL +V++D++ GE VAIVGASGSGKSTL+++LG LD P Sbjct: 2 RTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKP 61 Query: 68 STGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQ 127 S G+ + G++ L E LR + GF++Q +HLL + A NV +P + ++ Q Sbjct: 62 SAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQ 121 Query: 128 AQEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTA 187 +++A E+L ++GLA+R H PG+LSGG++QRV++ARAL+ +LADEPTG LD + Sbjct: 122 RRQRAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSG 181 Query: 188 DRTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSDQGLRVASQR 235 +++ EL G +IVTHD+++A RI+ + D G+ +A +R Sbjct: 182 QEVIKILKEL-HAEGHTIIIVTHDMQVASHAQRIIEIKD-GVIIADRR 227 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 10/221 (4%) Query: 15 RGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSL 74 RG+GKT+ V+ L ++D+++ G I+G SG+GKS+LL + L+ P++G V + Sbjct: 42 RGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEV 101 Query: 75 LGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQARE 134 D A L E++ ALR + +G ++Q +LL + DN+A+PL + V R Q ++ E Sbjct: 102 DDVDLATLDETQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHE 160 Query: 135 MLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTADRTFELM 194 +L VGL + P LSGG++QRV +ARAL + P +L DE T LD T +L+ Sbjct: 161 LLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLL 220 Query: 195 IELSRTLGTAFVIVTHDI----ELAGRC-----GRILRLSD 226 +++R LG +++TH++ E+A R GR+ L + Sbjct: 221 RDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGE 261 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 9 QAVLSSRGLGKTFTQGKYSVKVLANVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPS 68 AV++ R L K F QG V + + + GE + IVG SGSGK+T L ++ G+ P Sbjct: 13 DAVVADR-LVKYFGQGNARVLAIDHACLSAAFGEILFIVGPSGSGKTTFLSIISGILRPD 71 Query: 69 TGTVSLLGKDFAGLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQA 128 G V + G D L E + R ++GFV+Q +HL P ++ +NVA+PL+++ V A Sbjct: 72 GGVVRVNGVDLWNLPEDQLADFRLNTIGFVFQDYHLFPRLTSAENVAIPLILKNVDWKSA 131 Query: 129 QEQAREMLEKVGLAQRVSHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRSTAD 188 A L+ VGL P +LSGGE+QRVA+ARA+V+ P ++ DEPT +LD T Sbjct: 132 LASANMFLDVVGLKGCGDVFPLKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGR 191 Query: 189 RTFELMIELSRTLGTAFVIVTHDIELAGRCGRILRLSD 226 + E +IVTHD ++ RI+ ++D Sbjct: 192 MIIAFLREKILNPRRCILIVTHDPRISEFADRIVHMAD 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 715,416 Number of extensions: 30604 Number of successful extensions: 475 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 140 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)